Non-Coding RNA Search

Pig3-SRG8005J24

Sequence:


               
               GCCAGGTGGATGTCCTGGCCCCTCCCTGGGCATGGGTCACCTGTGGGGGAAGCTTTTCCC
GCCAGGGGGCATCATAGGGTCATGGAGCAAGGGGCCCTGGGTGGAGCGTTGTCCTGGTAG
GGGTGCCCCCTGCCTCCATGGCCCGCTGTGCTGTCCTGGGGCGGGGTGGGGGGCCCCCCT
CAACTCCATGACCTGTGCATGGGATATGTGGGCGGGAAGGGGGCCGGCACGGCCTCATCA
CATAAACCTTGTTCCCGCAGCTTTCTGAAACATGTCCAGGATCCCTCCATCGGGGTCTTC
CGTGGGTGGGCTGCCGTCCGTTCCCAACTCGGGGTGTCCTGAGGCATGTGCATCTCATCC
CATGGTTGGCAGAAGTGGTCCCAGGACCCCGCCCCCTTCCCCCTGGCATCCCCATATCCC
GTTTCATGGCCTTGCTACCTTCTCAATTGTTTTGCGATGTACTCTCTGTATTTTGGCAAA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGTGGATGTCCTGGCCCCTCCCTGGGCATGGGTCACCTGTGGGGGAAGCTTTTCCC
GCCAGGGGGCATCATAGGGTCATGGAGCAAGGGGCCCTGGGTGGAGCGTTGTCCTGGTAG
GGGTGCCCCCTGCCTCCATGGCCCGCTGTGCTGTCCTGGGGCGGGGTGGGGGGCCCCCCT
CAACTCCATGACCTGTGCATGGGATATGTGGGCGGGAAGGGGGCCGGCACGGCCTCATCA
CATAAACCTTGTTCCCGCAGCTTTCTGAAACATGTCCAGGATCCCTCCATCGGGGTCTTC
CGTGGGTGGGCTGCCGTCCGTTCCCAACTCGGGGTGTCCTGAGGCATGTGCATCTCATCC
CATGGTTGGCAGAAGTGGTCCCAGGACCCCGCCCCCTTCCCCCTGGCATCCCCATATCCC
GTTTCATGGCCTTGCTACCTTCTCAATTGTTTTGCGATGTACTCTCTGTATTTTGGCAAA
AA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-197, - strand, RNAz p=0.999873
               

               
               44-190, - strand, RNAz p=0.983426

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-197, - strand, RNAz p=0.999873
               

               
               44-190, - strand, RNAz p=0.983426

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               95-205, + strand, RNAmicro p=0.999968

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               95-205, + strand, RNAmicro p=0.999968

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-482, gnl|bosTau2|chr21 (45543832-45544313)
               

               
               1-482, gnl|canFam2|chr8 (72119196-72121085)
               

               
               1-482, gnl|hg17|chr14 (100386815-100388835)
               

               
               1-482, gnl|Hg17|chr14 (100387348-100387841)
               

               
               1-482, gnl|mm7|chr12 (107083539-107085230)
               

               
               1-482, gnl|panTro1|chr15 (100944330-100946348)
               

               
               1-482, gnl|rheMac2|chr7 (164133624-164135625)
               

               
               1-482, gnl|rn3|chr6 (134146025-134147884)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-482, gnl|bosTau2|chr21 (45543832-45544313)
               

               
               1-482, gnl|canFam2|chr8 (72119196-72121085)
               

               
               1-482, gnl|hg17|chr14 (100386815-100388835)
               

               
               1-482, gnl|Hg17|chr14 (100387348-100387841)
               

               
               1-482, gnl|mm7|chr12 (107083539-107085230)
               

               
               1-482, gnl|panTro1|chr15 (100944330-100946348)
               

               
               1-482, gnl|rheMac2|chr7 (164133624-164135625)
               

               
               1-482, gnl|rn3|chr6 (134146025-134147884)

	1-197, - strand, RNAz p=0.999873
	44-190, - strand, RNAz p=0.983426

	1-482, gnl\|bosTau2\|chr21 (45543832-45544313)
	1-482, gnl\|canFam2\|chr8 (72119196-72121085)
	1-482, gnl\|hg17\|chr14 (100386815-100388835)
	1-482, gnl\|Hg17\|chr14 (100387348-100387841)
	1-482, gnl\|mm7\|chr12 (107083539-107085230)
	1-482, gnl\|panTro1\|chr15 (100944330-100946348)
	1-482, gnl\|rheMac2\|chr7 (164133624-164135625)
	1-482, gnl\|rn3\|chr6 (134146025-134147884)