Non-Coding RNA Search

Pig3-SRG8005K03

Sequence:


               
               GTGGAAGACGCAGCTCCTATTCAGTACCGATGTGATGCCCAAATCTGATAGATAATGGTT
TTGTGTCTTTTGAATGAAACTCCCAACAGCACATCGTTCTGCCAGAACATATAGTGGTTT
CAAGAAGTCAACTCGTGAATTCTGAATTACATGCAAATGGAAACTAACTGTGTGTTCTCT
AATTCGGTATTGAGATTTTGCTTTTGCTTGTCGTGTAGAATAGCTTACTCAAATTTTTGG
TTTTAATTTCTGTCAGTTCCATAATCATTGCATGAGCATTCACCATCACCAAATGCTGGT
GCTGGCGCTCCTAATTTTCTTTCTTTTTAGTTTATTATTATTTCTAACTTTTTTGTTTTG
TTTTTTAACTTGCAGTGCAAGCTTCACATAAAGCCTGGCAAGCCAAAGGATGGTCCGCAT
TCACCTGCTTTTGCAGTAATATCGTATCTCTGCCATCTGTGTCCTTTTAGTTTGGTTTTA
TTCTTAGTTTTTTTTTTTTTTCCCCCTTTCCCCAGACACCATATAACTATTAACTCATGT
TGCTGACTGTTTTTGGGTGGTGGAAAATGGTAGAACAAGAGAATAACAGGAAAAGCTGTG
TGCAGCGGGACTTTGTTTCTGGAAACAAATGATTTGCCTGTTATGCCTGTCCCAAGTGGC
GGCAGGAAGCATGCCTGTTCTGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAAGACGCAGCTCCTATTCAGTACCGATGTGATGCCCAAATCTGATAGATAATGGTT
TTGTGTCTTTTGAATGAAACTCCCAACAGCACATCGTTCTGCCAGAACATATAGTGGTTT
CAAGAAGTCAACTCGTGAATTCTGAATTACATGCAAATGGAAACTAACTGTGTGTTCTCT
AATTCGGTATTGAGATTTTGCTTTTGCTTGTCGTGTAGAATAGCTTACTCAAATTTTTGG
TTTTAATTTCTGTCAGTTCCATAATCATTGCATGAGCATTCACCATCACCAAATGCTGGT
GCTGGCGCTCCTAATTTTCTTTCTTTTTAGTTTATTATTATTTCTAACTTTTTTGTTTTG
TTTTTTAACTTGCAGTGCAAGCTTCACATAAAGCCTGGCAAGCCAAAGGATGGTCCGCAT
TCACCTGCTTTTGCAGTAATATCGTATCTCTGCCATCTGTGTCCTTTTAGTTTGGTTTTA
TTCTTAGTTTTTTTTTTTTTTCCCCCTTTCCCCAGACACCATATAACTATTAACTCATGT
TGCTGACTGTTTTTGGGTGGTGGAAAATGGTAGAACAAGAGAATAACAGGAAAAGCTGTG
TGCAGCGGGACTTTGTTTCTGGAAACAAATGATTTGCCTGTTATGCCTGTCCCAAGTGGC
GGCAGGAAGCATGCCTGTTCTGTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               234-467, - strand, RNAz p=0.993703

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-467, - strand, RNAz p=0.993703

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-683, gnl|bosTau2|chr6 (48223459-48224131)
               

               
               2-683, gnl|Hg17|chr4 (78312455-78313128)
               

               
               2-683, gnl|Mm7|chr5 (93158222-93158874)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-683, gnl|bosTau2|chr6 (48223459-48224131)
               

               
               2-683, gnl|Hg17|chr4 (78312455-78313128)
               

               
               2-683, gnl|Mm7|chr5 (93158222-93158874)

	2-683, gnl\|bosTau2\|chr6 (48223459-48224131)
	2-683, gnl\|Hg17\|chr4 (78312455-78313128)
	2-683, gnl\|Mm7\|chr5 (93158222-93158874)