Non-Coding RNA Search

Pig3-SRG8005L24

Sequence:


               
               CGGGCCCGCACGGACTCCCGGGGTGCACCCTGTACCACCCCACCATCCGCTCCGAGAAGT
GTGGTATCCCGCCTGAACGGCTCCTCCCTGCGCCTGGAGTGGAGCGCCCCCCTCGAGTCG
GGCGGCAGAGAGGACCTCACCTACGCGCTCCGCTGCCGGGAGTGCCGGCCTGGGGGTTCC
TGCATGCCCTGTGGGGGATACCTGACCTTCGACCCTGGCCCCCGGGACCTGGTGGAGCCC
TGGGTGGCAATTCGTGGGCTGCGTCCTGACTTCACCTACACCTTCGAGGTCACTGCCTTG
AACGGGGTGTCCTCCTTATCCAGCGGGCCAGTCCCATTTGAGGCTGTGAATGTCACCACC
GACCGAGAGGTGCCGCCCCCAGTGTCTGACATCATGGTGACTCGGTCATCCCCCATCAGC
TTGAGCCTGGCATGGACTGTCCCTCGGGCACCCATCGGGGCCGTGCTGGACTACGATGTC
AAGTACCATGAGATAGGCGCATAGGGTCCTATCAGCGTGCGGTTCCTCAAGACGTCGGAG
AACCGGGCAGATCTGCGGGGACTGAAGCGGGGAGCCAGCTACCTGGTCCAGGTGCGGGCA
CGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCCCGCACGGACTCCCGGGGTGCACCCTGTACCACCCCACCATCCGCTCCGAGAAGT
GTGGTATCCCGCCTGAACGGCTCCTCCCTGCGCCTGGAGTGGAGCGCCCCCCTCGAGTCG
GGCGGCAGAGAGGACCTCACCTACGCGCTCCGCTGCCGGGAGTGCCGGCCTGGGGGTTCC
TGCATGCCCTGTGGGGGATACCTGACCTTCGACCCTGGCCCCCGGGACCTGGTGGAGCCC
TGGGTGGCAATTCGTGGGCTGCGTCCTGACTTCACCTACACCTTCGAGGTCACTGCCTTG
AACGGGGTGTCCTCCTTATCCAGCGGGCCAGTCCCATTTGAGGCTGTGAATGTCACCACC
GACCGAGAGGTGCCGCCCCCAGTGTCTGACATCATGGTGACTCGGTCATCCCCCATCAGC
TTGAGCCTGGCATGGACTGTCCCTCGGGCACCCATCGGGGCCGTGCTGGACTACGATGTC
AAGTACCATGAGATAGGCGCATAGGGTCCTATCAGCGTGCGGTTCCTCAAGACGTCGGAG
AACCGGGCAGATCTGCGGGGACTGAAGCGGGGAGCCAGCTACCTGGTCCAGGTGCGGGCA
CGCTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               239-358, + strand, RNAz p=0.518868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-358, + strand, RNAz p=0.518868

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-370, gnl|bosTau2|chr25 (32226852-32227182)
               

               
               40-370, gnl|Hg17|chr7 (100062160-100061830)
               

               
               40-370, gnl|Mm7|chr5 (136279404-136279734)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-370, gnl|bosTau2|chr25 (32226852-32227182)
               

               
               40-370, gnl|Hg17|chr7 (100062160-100061830)
               

               
               40-370, gnl|Mm7|chr5 (136279404-136279734)

	40-370, gnl\|bosTau2\|chr25 (32226852-32227182)
	40-370, gnl\|Hg17\|chr7 (100062160-100061830)
	40-370, gnl\|Mm7\|chr5 (136279404-136279734)