Non-Coding RNA Search

Pig3-SRG8005N11

Sequence:


               
               CTGGGGTGAGAGCTGGGAGGGGTGGGCCCTGCCCCCAAACCCGGACTCCTGCTGTGCGTT
CCCAGATTGCGGCTGTCCCCCGACGCCAGCCCCCATCAGCTGGTGAGCACGTTCCGGCTG
CCATCGGGCGTGGGCGCCACCTGCGTGCTCAAGTCTCCCGCCAATGGCTCGCTGGGGCCC
ACGCTGAACCTGATCAGCGGTGAGTCGCGCCTGCTGGCTGCGCGGTACTTTGACGGCATG
TGCCTGGAGTCCTTCACGCATGGGCTGCCGCTGTCCAACTTCGTGCCACCCCCACCCTCG
CCCGCCCCGTCTGACTCTCCCATGTCCCTGGACGATGACCCGCTGCAGGCCTGGAACGCC
TCCTTGCCGCCCACCTCTGGACCAGATAATTGGACGTCGGCACCCTCCCTGCCGCGCCTG
GTGCGGGAACCCGTCCGCTGCACCTGCTCCGGACAGGGCACTGGCTTCTCCTGCCCGGGC
GGCGTGGGCGGGCACCCGCCCCANATGCGGGTGGTCACGGGCGACATCCTGACCGACATC
ACCGGCCACAACGTGTCCGAGTACTTGCTCTTCACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGTGAGAGCTGGGAGGGGTGGGCCCTGCCCCCAAACCCGGACTCCTGCTGTGCGTT
CCCAGATTGCGGCTGTCCCCCGACGCCAGCCCCCATCAGCTGGTGAGCACGTTCCGGCTG
CCATCGGGCGTGGGCGCCACCTGCGTGCTCAAGTCTCCCGCCAATGGCTCGCTGGGGCCC
ACGCTGAACCTGATCAGCGGTGAGTCGCGCCTGCTGGCTGCGCGGTACTTTGACGGCATG
TGCCTGGAGTCCTTCACGCATGGGCTGCCGCTGTCCAACTTCGTGCCACCCCCACCCTCG
CCCGCCCCGTCTGACTCTCCCATGTCCCTGGACGATGACCCGCTGCAGGCCTGGAACGCC
TCCTTGCCGCCCACCTCTGGACCAGATAATTGGACGTCGGCACCCTCCCTGCCGCGCCTG
GTGCGGGAACCCGTCCGCTGCACCTGCTCCGGACAGGGCACTGGCTTCTCCTGCCCGGGC
GGCGTGGGCGGGCACCCGCCCCANATGCGGGTGGTCACGGGCGACATCCTGACCGACATC
ACCGGCCACAACGTGTCCGAGTACTTGCTCTTCACCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               383-578, - strand, RNAz p=0.869142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-578, - strand, RNAz p=0.869142

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               392-511, - strand, RNAmicro p=0.973413
               

               
               399-496, + strand, RNAmicro p=0.935015

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               392-511, - strand, RNAmicro p=0.973413
               

               
               399-496, + strand, RNAmicro p=0.935015

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-346, gnl|bosTau2|chr11 (86334235-86333894)
               

               
               1-346, gnl|canFam2|chr9 (51958395-51958083)
               

               
               1-346, gnl|danRer3|chr5 (14079426-14079738)
               

               
               1-346, gnl|echTel1|scaffold_130948 (791-1103)
               

               
               1-346, gnl|fr1|chrUn (310371637-310371336)
               

               
               1-346, gnl|galGal2|chrUn (36417633-36417940)
               

               
               1-346, gnl|hg17|chr9 (137183305-137183614)
               

               
               1-346, gnl|Hg17|chr9 (137183712-137183306)
               

               
               1-346, gnl|mm7|chr2 (25450453-25450141)
               

               
               1-346, gnl|Mm7|chr2 (25450101-25450450)
               

               
               1-346, gnl|monDom2|scaffold_1 (188273922-188273612)
               

               
               1-346, gnl|panTro1|chr11 (121955899-121956208)
               

               
               1-346, gnl|rheMac2|chr15 (1247089-1246780)
               

               
               1-346, gnl|rn3|chr3 (3610060-3609748)
               

               
               1-346, gnl|tetNig1|chrUn_random (99490745-99491057)
               

               
               1-346, gnl|xenTro1|scaffold_302 (1284930-1285233)
               


               
               383-578, gnl|bosTau2|chr11 (86333811-86333616)
               

               
               383-578, gnl|Hg17|chr9 (137183217-137183022)
               

               
               383-578, gnl|Mm7|chr2 (25450537-25450732)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-346, gnl|bosTau2|chr11 (86334235-86333894)
               

               
               1-346, gnl|canFam2|chr9 (51958395-51958083)
               

               
               1-346, gnl|danRer3|chr5 (14079426-14079738)
               

               
               1-346, gnl|echTel1|scaffold_130948 (791-1103)
               

               
               1-346, gnl|fr1|chrUn (310371637-310371336)
               

               
               1-346, gnl|galGal2|chrUn (36417633-36417940)
               

               
               1-346, gnl|hg17|chr9 (137183305-137183614)
               

               
               1-346, gnl|Hg17|chr9 (137183712-137183306)
               

               
               1-346, gnl|mm7|chr2 (25450453-25450141)
               

               
               1-346, gnl|Mm7|chr2 (25450101-25450450)
               

               
               1-346, gnl|monDom2|scaffold_1 (188273922-188273612)
               

               
               1-346, gnl|panTro1|chr11 (121955899-121956208)
               

               
               1-346, gnl|rheMac2|chr15 (1247089-1246780)
               

               
               1-346, gnl|rn3|chr3 (3610060-3609748)
               

               
               1-346, gnl|tetNig1|chrUn_random (99490745-99491057)
               

               
               1-346, gnl|xenTro1|scaffold_302 (1284930-1285233)
               


               
               383-578, gnl|bosTau2|chr11 (86333811-86333616)
               

               
               383-578, gnl|Hg17|chr9 (137183217-137183022)
               

               
               383-578, gnl|Mm7|chr2 (25450537-25450732)

	392-511, - strand, RNAmicro p=0.973413
	399-496, + strand, RNAmicro p=0.935015

	1-346, gnl\|bosTau2\|chr11 (86334235-86333894)
	1-346, gnl\|canFam2\|chr9 (51958395-51958083)
	1-346, gnl\|danRer3\|chr5 (14079426-14079738)
	1-346, gnl\|echTel1\|scaffold_130948 (791-1103)
	1-346, gnl\|fr1\|chrUn (310371637-310371336)
	1-346, gnl\|galGal2\|chrUn (36417633-36417940)
	1-346, gnl\|hg17\|chr9 (137183305-137183614)
	1-346, gnl\|Hg17\|chr9 (137183712-137183306)
	1-346, gnl\|mm7\|chr2 (25450453-25450141)
	1-346, gnl\|Mm7\|chr2 (25450101-25450450)
	1-346, gnl\|monDom2\|scaffold_1 (188273922-188273612)
	1-346, gnl\|panTro1\|chr11 (121955899-121956208)
	1-346, gnl\|rheMac2\|chr15 (1247089-1246780)
	1-346, gnl\|rn3\|chr3 (3610060-3609748)
	1-346, gnl\|tetNig1\|chrUn_random (99490745-99491057)
	1-346, gnl\|xenTro1\|scaffold_302 (1284930-1285233)

	383-578, gnl\|bosTau2\|chr11 (86333811-86333616)
	383-578, gnl\|Hg17\|chr9 (137183217-137183022)
	383-578, gnl\|Mm7\|chr2 (25450537-25450732)