Non-Coding RNA Search

Pig3-SRG8005N14

Sequence:


               
               TGATGGCAAACCTCGGGCTGCCTTCTCCAATGCCTTGGAGCCTGACTTCAAGGCCATGAG
CATTGCTGTGACAGGCTCTGGCAGCTGTCGGCATCTACAGTTTGTCCCCGTGGCGCCACC
CAAGAGGGTGCCCTCAGAGGCACCACCCACAGAGGTGCCAGATAGGGACCCTGAGAAGAG
CAGCGAGGATGATGTCTACCTGCACACTGTCATCCCAGCCGTGGTGGTTGCAGCCATCCT
GCTCATTGCTGGTATCATTGCCATGATCTGCTATCGTAAGAAGCGGAAGGGCAAGCTCAC
CCTTGAGGACCAGGCCACCTTCATCAAGAAGGGGGTGCCGATCATCTTTGCAGATGAGCT
GGATGACTCCAAGCCCCCACCCTCCTCCAGCATGCCACTTATCCTGCAGGAGGAAAAAGC
TCCCCTCCCCCCTCCTGAGTACCCCAACCAGAGCGTGCCCGAGACCACTCCTCTGAACCA
GGACACCGTGGGAGAGTACACACCTCTGCGGGATGAGGATCCCAATGCACCTCCCTACCA
GCCCCCGCCTCCCTTCACAGCCCCCATGGAGGGCAAGGGCTCCCGTCCTAAGAACATGAC
CCCATACCGGTCGCCCCCTCCCTACGTCCCCCCTTAACCCACAAGCGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGGCAAACCTCGGGCTGCCTTCTCCAATGCCTTGGAGCCTGACTTCAAGGCCATGAG
CATTGCTGTGACAGGCTCTGGCAGCTGTCGGCATCTACAGTTTGTCCCCGTGGCGCCACC
CAAGAGGGTGCCCTCAGAGGCACCACCCACAGAGGTGCCAGATAGGGACCCTGAGAAGAG
CAGCGAGGATGATGTCTACCTGCACACTGTCATCCCAGCCGTGGTGGTTGCAGCCATCCT
GCTCATTGCTGGTATCATTGCCATGATCTGCTATCGTAAGAAGCGGAAGGGCAAGCTCAC
CCTTGAGGACCAGGCCACCTTCATCAAGAAGGGGGTGCCGATCATCTTTGCAGATGAGCT
GGATGACTCCAAGCCCCCACCCTCCTCCAGCATGCCACTTATCCTGCAGGAGGAAAAAGC
TCCCCTCCCCCCTCCTGAGTACCCCAACCAGAGCGTGCCCGAGACCACTCCTCTGAACCA
GGACACCGTGGGAGAGTACACACCTCTGCGGGATGAGGATCCCAATGCACCTCCCTACCA
GCCCCCGCCTCCCTTCACAGCCCCCATGGAGGGCAAGGGCTCCCGTCCTAAGAACATGAC
CCCATACCGGTCGCCCCCTCCCTACGTCCCCCCTTAACCCACAAGCGCCAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q91XP6_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91XP6_RAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-519, - strand, RNAz p=0.996291
               

               
               532-649, - strand, RNAz p=0.699848

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-519, - strand, RNAz p=0.996291
               

               
               532-649, - strand, RNAz p=0.699848

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-649, gnl|bosTau2|chr22 (37961263-37961911)
               

               
               1-649, gnl|Hg17|chr3 (49545000-49545648)
               

               
               1-649, gnl|Mm7|chr9 (107937484-107936836)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-649, gnl|bosTau2|chr22 (37961263-37961911)
               

               
               1-649, gnl|Hg17|chr3 (49545000-49545648)
               

               
               1-649, gnl|Mm7|chr9 (107937484-107936836)

	240-519, - strand, RNAz p=0.996291
	532-649, - strand, RNAz p=0.699848

	1-649, gnl\|bosTau2\|chr22 (37961263-37961911)
	1-649, gnl\|Hg17\|chr3 (49545000-49545648)
	1-649, gnl\|Mm7\|chr9 (107937484-107936836)