Non-Coding RNA Search

Pig3-SRG8005P23

Sequence:


               
               GTTAAGGCGAATGCTCCTGACTAATAACGCCAAAAACCACTCTCCTAAACAACTCCAAGA
AGCATTTTCAGCTGTCCCAGTAAGTCACACACAAGTGATGCAGATTCTAGAACACTTGAC
TCTACTCTCCGCTAGTGAACTTATACCGTATGCAGAAGTATTAACATCTAATATGAATCA
GCTGTTGAATTCAGGGGTTCCACGGCGAATTCTTCAAACAGTCAATAAACTGTGGATGGT
TCTTAATACTGTGATGCCTATAAGGCTGTGGGTTATGACAGTTAATGCCCTTCAACCTTC
AATAAAGTTTGTACGGCAGCAAAGTATACTCAGAATGACCTGATGATAGATCCTCTCATT
GTGCTAAGATGTGATCAGAGAGTATACAGATGCCCCCCACTGATGGATATTACTCTACAC
ATGTTGAATGGATACCTTCTGGCATCCAAAGCTTACCTTATTGCTCATCTGAAGGAAACG
GCAGAACAAGATAGGCCTTCTCAGAATAATACAATAGGTTTAGTTGGACAAACCGATGGT
CCAGAAGTTACCAGAGAAGAATTGAAAAATGCATTACTGGCTGCTCATGATAGTGCAGCT
GTCCAGATTCTCTTGGAGATTTGCTTACCTACTGAAGAAGAGAGGCAAAGGGTGTCAATC
CAGACAGCTCGCTAAGGAATGTTCAAAGTGTTATTACTGCCAGCTCTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAGGCGAATGCTCCTGACTAATAACGCCAAAAACCACTCTCCTAAACAACTCCAAGA
AGCATTTTCAGCTGTCCCAGTAAGTCACACACAAGTGATGCAGATTCTAGAACACTTGAC
TCTACTCTCCGCTAGTGAACTTATACCGTATGCAGAAGTATTAACATCTAATATGAATCA
GCTGTTGAATTCAGGGGTTCCACGGCGAATTCTTCAAACAGTCAATAAACTGTGGATGGT
TCTTAATACTGTGATGCCTATAAGGCTGTGGGTTATGACAGTTAATGCCCTTCAACCTTC
AATAAAGTTTGTACGGCAGCAAAGTATACTCAGAATGACCTGATGATAGATCCTCTCATT
GTGCTAAGATGTGATCAGAGAGTATACAGATGCCCCCCACTGATGGATATTACTCTACAC
ATGTTGAATGGATACCTTCTGGCATCCAAAGCTTACCTTATTGCTCATCTGAAGGAAACG
GCAGAACAAGATAGGCCTTCTCAGAATAATACAATAGGTTTAGTTGGACAAACCGATGGT
CCAGAAGTTACCAGAGAAGAATTGAAAAATGCATTACTGGCTGCTCATGATAGTGCAGCT
GTCCAGATTCTCTTGGAGATTTGCTTACCTACTGAAGAAGAGAGGCAAAGGGTGTCAATC
CAGACAGCTCGCTAAGGAATGTTCAAAGTGTTATTACTGCCAGCTCTCCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55645747|ref|XP_511606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55645747|ref|XP_511606.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               388-546, - strand, RNAz p=0.636845

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-546, - strand, RNAz p=0.636845

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               61-259, gnl|bosTau2|chr19 (5511172-5511370)
               

               
               61-259, gnl|Hg17|chr17 (57310233-57310035)
               

               
               61-259, gnl|Mm7|chr11 (86295054-86294856)
               


               
               388-587, gnl|bosTau2|chr19 (5522520-5522719)
               

               
               388-587, gnl|Hg17|chr17 (57304605-57304409)
               

               
               388-587, gnl|Mm7|chr11 (86287844-86287645)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-259, gnl|bosTau2|chr19 (5511172-5511370)
               

               
               61-259, gnl|Hg17|chr17 (57310233-57310035)
               

               
               61-259, gnl|Mm7|chr11 (86295054-86294856)
               


               
               388-587, gnl|bosTau2|chr19 (5522520-5522719)
               

               
               388-587, gnl|Hg17|chr17 (57304605-57304409)
               

               
               388-587, gnl|Mm7|chr11 (86287844-86287645)

	61-259, gnl\|bosTau2\|chr19 (5511172-5511370)
	61-259, gnl\|Hg17\|chr17 (57310233-57310035)
	61-259, gnl\|Mm7\|chr11 (86295054-86294856)

	388-587, gnl\|bosTau2\|chr19 (5522520-5522719)
	388-587, gnl\|Hg17\|chr17 (57304605-57304409)
	388-587, gnl\|Mm7\|chr11 (86287844-86287645)