Non-Coding RNA Search

Pig3-SRG8006M09

Sequence:


               
               GTGCGCCTGGCCTCAGCAGGGAGCCCGAGTGCCCGCAGGTTCCCACCGGCCGGCACCAGA
GCTGGGGATTTCCACCACCCGCCTATGGAGACCCGACGCCGCCGGCGCTTTCCTGCCCGG
GCCGCCAGAAGGCGGGGCCTGGGAGCGGGAAGCCGTCCCTGCGGCCTTGCTGTCCCTCTG
GTGCCCTTTGGTCAAGTCTGGTGCGGAAGGGCAGCCATCGCCGCTGTCCCTGGTTAGGGT
GGATGGGCCAGAGTCGCCAAATATTTTGACTTGCCTTACGTAGCTGGACGGTTCAACTGG
AAACTTATCAAAGAAGGAGGAAGGGAGGGCGCGCAGCTTTGAGTGCGTGCTCACATTTTG
TTGTTCAACTTGGACTTGGCTGACCCTATGGAGCAGTGGGACCTTGAGCAAATCCCTTTA
ACGTTCCGATTTCTTAGTCTGTAAAATGGGAATAATTGTCTCACTGGTGTGTATGGAAGA
TAAATATTATACCGTACTTGACAAATTGTAAAAGATTGTGAACAATACAATGACCAGCAT
TTGTCTAGAGCTCTGAAAGTGCATTCCCAGACATTATCTCACCAGTCCCCACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCGCCTGGCCTCAGCAGGGAGCCCGAGTGCCCGCAGGTTCCCACCGGCCGGCACCAGA
GCTGGGGATTTCCACCACCCGCCTATGGAGACCCGACGCCGCCGGCGCTTTCCTGCCCGG
GCCGCCAGAAGGCGGGGCCTGGGAGCGGGAAGCCGTCCCTGCGGCCTTGCTGTCCCTCTG
GTGCCCTTTGGTCAAGTCTGGTGCGGAAGGGCAGCCATCGCCGCTGTCCCTGGTTAGGGT
GGATGGGCCAGAGTCGCCAAATATTTTGACTTGCCTTACGTAGCTGGACGGTTCAACTGG
AAACTTATCAAAGAAGGAGGAAGGGAGGGCGCGCAGCTTTGAGTGCGTGCTCACATTTTG
TTGTTCAACTTGGACTTGGCTGACCCTATGGAGCAGTGGGACCTTGAGCAAATCCCTTTA
ACGTTCCGATTTCTTAGTCTGTAAAATGGGAATAATTGTCTCACTGGTGTGTATGGAAGA
TAAATATTATACCGTACTTGACAAATTGTAAAAGATTGTGAACAATACAATGACCAGCAT
TTGTCTAGAGCTCTGAAAGTGCATTCCCAGACATTATCTCACCAGTCCCCACACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               108-215, - strand, RNAz p=0.523923

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-215, - strand, RNAz p=0.523923

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-595, gnl|bosTau2|chr10 (61713842-61714426)
               

               
               1-595, gnl|canFam2|chr8 (52907196-52907850)
               

               
               1-595, gnl|dasNov1|scaffold_162667 (1529-860)
               

               
               1-595, gnl|hg17|chr14 (76569974-76570639)
               

               
               1-595, gnl|Hg17|chr14 (76570083-76570675)
               

               
               1-595, gnl|loxAfr1|scaffold_27994 (9642-8990)
               

               
               1-595, gnl|mm7|chr12 (84891734-84892346)
               

               
               1-595, gnl|Mm7|chr12 (84891834-84892383)
               

               
               1-595, gnl|oryCun1|scaffold_187934 (49470-50080)
               

               
               1-595, gnl|panTro1|chr15 (76624183-76624848)
               

               
               1-595, gnl|rheMac2|chr7 (140177762-140178426)
               

               
               1-595, gnl|rn3|chr6 (111018101-111018728)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-595, gnl|bosTau2|chr10 (61713842-61714426)
               

               
               1-595, gnl|canFam2|chr8 (52907196-52907850)
               

               
               1-595, gnl|dasNov1|scaffold_162667 (1529-860)
               

               
               1-595, gnl|hg17|chr14 (76569974-76570639)
               

               
               1-595, gnl|Hg17|chr14 (76570083-76570675)
               

               
               1-595, gnl|loxAfr1|scaffold_27994 (9642-8990)
               

               
               1-595, gnl|mm7|chr12 (84891734-84892346)
               

               
               1-595, gnl|Mm7|chr12 (84891834-84892383)
               

               
               1-595, gnl|oryCun1|scaffold_187934 (49470-50080)
               

               
               1-595, gnl|panTro1|chr15 (76624183-76624848)
               

               
               1-595, gnl|rheMac2|chr7 (140177762-140178426)
               

               
               1-595, gnl|rn3|chr6 (111018101-111018728)

	1-595, gnl\|bosTau2\|chr10 (61713842-61714426)
	1-595, gnl\|canFam2\|chr8 (52907196-52907850)
	1-595, gnl\|dasNov1\|scaffold_162667 (1529-860)
	1-595, gnl\|hg17\|chr14 (76569974-76570639)
	1-595, gnl\|Hg17\|chr14 (76570083-76570675)
	1-595, gnl\|loxAfr1\|scaffold_27994 (9642-8990)
	1-595, gnl\|mm7\|chr12 (84891734-84892346)
	1-595, gnl\|Mm7\|chr12 (84891834-84892383)
	1-595, gnl\|oryCun1\|scaffold_187934 (49470-50080)
	1-595, gnl\|panTro1\|chr15 (76624183-76624848)
	1-595, gnl\|rheMac2\|chr7 (140177762-140178426)
	1-595, gnl\|rn3\|chr6 (111018101-111018728)