Non-Coding RNA Search

Pig3-SRG8007F07

Sequence:


               
               TCATGTAATGGAATACTATATAGCAAGGAAAGAGCTATTAATAGCATGCGGCAACTTGGA
TGAGTTTCAGCATTATGCTGAGTGAAAGAAGCCAGTCTTGGAAGATTATATTCTGTTTAA
TTCCATTTTTTGACATTCTGGGGAAAATAAAACATGATGAAGAATATATCTGTAGTTGCC
AGGAGTTGAGGTAGGGAGAGGGTGTCACTAAAGAGGAATATCCTGAGGGAGTTTTTTTTG
AGTTGTTGGAACATTTCTGGATCCTGATTGTGGTAGTGGTTATATGACTCTCTACATGTG
TTAAAATTAACAGAACTATATGCCAAACGTCAGTTTAACTGTAAGATAACCAAAACAAAC
AAACAAAAAAGAAGCAGCAGAAGCATTTGCCCCTTCAAAGTAGCCTGTTCAGGGTTATGG
ACTTATTTCAGTAAAACTTTGTTTTCTTAAATCCTTTTTTTTAGACCACACCTGCTGCAT
ATGGAGGTTCCTAGCCTGAGAACTAACATATGCTGAGGGTGCGGCCCTAAAAATACAAAA
AAAAGAAAAAAGGAATAAAGAATGAGCAGTAGTAATAATAGCTAAGACTTTCTTACAGTA
TAAGCTAGATAGAGTTCTAAGTGCTTTACAACTCAGTCTAACTTCCCTAAAGCCCAGGTT
TTAAGCCCAGGGATAAGGTCTGTAAAAGCCTTGAATGTTGAATGAAAGAATTCTCCATGT
AGGCAGTGTGGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGTAATGGAATACTATATAGCAAGGAAAGAGCTATTAATAGCATGCGGCAACTTGGA
TGAGTTTCAGCATTATGCTGAGTGAAAGAAGCCAGTCTTGGAAGATTATATTCTGTTTAA
TTCCATTTTTTGACATTCTGGGGAAAATAAAACATGATGAAGAATATATCTGTAGTTGCC
AGGAGTTGAGGTAGGGAGAGGGTGTCACTAAAGAGGAATATCCTGAGGGAGTTTTTTTTG
AGTTGTTGGAACATTTCTGGATCCTGATTGTGGTAGTGGTTATATGACTCTCTACATGTG
TTAAAATTAACAGAACTATATGCCAAACGTCAGTTTAACTGTAAGATAACCAAAACAAAC
AAACAAAAAAGAAGCAGCAGAAGCATTTGCCCCTTCAAAGTAGCCTGTTCAGGGTTATGG
ACTTATTTCAGTAAAACTTTGTTTTCTTAAATCCTTTTTTTTAGACCACACCTGCTGCAT
ATGGAGGTTCCTAGCCTGAGAACTAACATATGCTGAGGGTGCGGCCCTAAAAATACAAAA
AAAAGAAAAAAGGAATAAAGAATGAGCAGTAGTAATAATAGCTAAGACTTTCTTACAGTA
TAAGCTAGATAGAGTTCTAAGTGCTTTACAACTCAGTCTAACTTCCCTAAAGCCCAGGTT
TTAAGCCCAGGGATAAGGTCTGTAAAAGCCTTGAATGTTGAATGAAAGAATTCTCCATGT
AGGCAGTGTGGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-110, + strand, RNAz p=0.896711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, + strand, RNAz p=0.896711

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-359, gnl|bosTau2|chr29 (19483631-19483268)
               

               
               1-359, gnl|canFam2|chr21 (44443117-44443987)
               

               
               1-359, gnl|hg17|chr11 (19103369-19104222)
               

               
               1-359, gnl|Hg17|chr11 (19103849-19104173)
               

               
               1-359, gnl|panTro1|chr9 (19334143-19334996)
               

               
               1-359, gnl|rheMac2|chr14 (52743233-52742387)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-359, gnl|bosTau2|chr29 (19483631-19483268)
               

               
               1-359, gnl|canFam2|chr21 (44443117-44443987)
               

               
               1-359, gnl|hg17|chr11 (19103369-19104222)
               

               
               1-359, gnl|Hg17|chr11 (19103849-19104173)
               

               
               1-359, gnl|panTro1|chr9 (19334143-19334996)
               

               
               1-359, gnl|rheMac2|chr14 (52743233-52742387)

	1-359, gnl\|bosTau2\|chr29 (19483631-19483268)
	1-359, gnl\|canFam2\|chr21 (44443117-44443987)
	1-359, gnl\|hg17\|chr11 (19103369-19104222)
	1-359, gnl\|Hg17\|chr11 (19103849-19104173)
	1-359, gnl\|panTro1\|chr9 (19334143-19334996)
	1-359, gnl\|rheMac2\|chr14 (52743233-52742387)