Non-Coding RNA Search

Pig3-SRG8007H07

Sequence:


               
               CCCCAGAGAAGGCCAAGTCCCCTGGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCCAAGTC
CCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCC
AAGTCCCCAGAGAAGGCCAAATCCCCAGAGAAGGCCAAGTCTCCTGTGAAGGAGGAGGCC
AAGTCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCC
AAATCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCC
AAGTCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCC
AAGTCCCCTGTGAAGGAGGAAGCCAAGTCCCCAGAAAAGGCCAAATCCCCAGAGAAGGCC
AAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCCAAATCCCCAGAGAAGGCC
AAGTCTCCTGTGAAGGAGGAGGCCAAATCCCCAGAGAAAGTCAAGTCCCCAGTAAAAGAA
GAGGCCAAGTCTCCAGCTGAAGTGAAGTCCCCAGAGAAGGCCAAGTCTCCTGAGAAGGAG
GTCCCAAAGAAGGAAGAGGCAAAATCCCCCATGAAGGAGGAAGAGAAACCCCAGGAGGTG
AAAGCTAAAGAGCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAGAGAAGGCCAAGTCCCCTGGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCCAAGTC
CCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCC
AAGTCCCCAGAGAAGGCCAAATCCCCAGAGAAGGCCAAGTCTCCTGTGAAGGAGGAGGCC
AAGTCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCC
AAATCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCC
AAGTCCCCAGAGAAGGCCAAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCC
AAGTCCCCTGTGAAGGAGGAAGCCAAGTCCCCAGAAAAGGCCAAATCCCCAGAGAAGGCC
AAGTCCCCTGTGAAGGAGGAGGCCAAGTCCCCAGAGAAGGCCAAATCCCCAGAGAAGGCC
AAGTCTCCTGTGAAGGAGGAGGCCAAATCCCCAGAGAAAGTCAAGTCCCCAGTAAAAGAA
GAGGCCAAGTCTCCAGCTGAAGTGAAGTCCCCAGAGAAGGCCAAGTCTCCTGAGAAGGAG
GTCCCAAAGAAGGAAGAGGCAAAATCCCCCATGAAGGAGGAAGAGAAACCCCAGGAGGTG
AAAGCTAAAGAGCCCCCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37722508|gb|AAP33253.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37722508|gb|AAP33253.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               260-379, - strand, RNAz p=0.999678
               

               
               473-580, - strand, RNAz p=0.862315

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-379, - strand, RNAz p=0.999678
               

               
               473-580, - strand, RNAz p=0.862315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-680, gnl|bosTau2|chr17 (39447216-39447909)
               

               
               1-680, gnl|Hg17|chr22 (28210126-28210702)
               

               
               1-680, gnl|Mm7|chr11 (4892585-4891919)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-680, gnl|bosTau2|chr17 (39447216-39447909)
               

               
               1-680, gnl|Hg17|chr22 (28210126-28210702)
               

               
               1-680, gnl|Mm7|chr11 (4892585-4891919)

	260-379, - strand, RNAz p=0.999678
	473-580, - strand, RNAz p=0.862315

	1-680, gnl\|bosTau2\|chr17 (39447216-39447909)
	1-680, gnl\|Hg17\|chr22 (28210126-28210702)
	1-680, gnl\|Mm7\|chr11 (4892585-4891919)