Non-Coding RNA Search

Pig3-SRG8007J08

Sequence:


               
               GCTCACCCACAAGGCAAGTGCCAGCCCTCCCACCAGCCCAACCAGCTCCCAGTTCAGCTG
CAGAAACGGCCAAACGTCTCTCTGGAACCCAAACAGGAAGCTGGGGAGAAGGGGGCCAAC
GGCCGGGACCTCTGAGGCTCCTCCAGGAAACATGTGGGGAGGGAGATGGGTGGCCGGGGC
AAGGTCAGGCATGCTCACCCTCATAACCCCCACCCCAGGAGCCCCCCGCAAGCACTGAGA
ATCCCCACCTCATCTCCCTGCTGGCAGGGGACCTGGGAGGGCCTGGGGAAAACAGTTGTC
CTCTTACAGAAGACGCTAGGGGGAGGGTTAGCTTTCAGAACCATCACTCCCGGGTGAATT
TTTTTCCATATATTTTATTTTTTGCTTTTTTagggccgcacctgtggcatagggaagttc
ccaagctaggggttgaatcagagctacagctgccagcttacaacacagccacagcaactc
gggatccttaacacactgagtgaggccagggatgtaacccacgtcctcatggatcctagt
tgggttcattaccgctgagccatgatgggaactcTCCATAGATTTTATTTTTTGTATTAT
TTATTTATTTCCTGGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACCCACAAGGCAAGTGCCAGCCCTCCCACCAGCCCAACCAGCTCCCAGTTCAGCTG
CAGAAACGGCCAAACGTCTCTCTGGAACCCAAACAGGAAGCTGGGGAGAAGGGGGCCAAC
GGCCGGGACCTCTGAGGCTCCTCCAGGAAACATGTGGGGAGGGAGATGGGTGGCCGGGGC
AAGGTCAGGCATGCTCACCCTCATAACCCCCACCCCAGGAGCCCCCCGCAAGCACTGAGA
ATCCCCACCTCATCTCCCTGCTGGCAGGGGACCTGGGAGGGCCTGGGGAAAACAGTTGTC
CTCTTACAGAAGACGCTAGGGGGAGGGTTAGCTTTCAGAACCATCACTCCCGGGTGAATT
TTTTTCCATATATTTTATTTTTTGCTTTTTTagggccgcacctgtggcatagggaagttc
ccaagctaggggttgaatcagagctacagctgccagcttacaacacagccacagcaactc
gggatccttaacacactgagtgaggccagggatgtaacccacgtcctcatggatcctagt
tgggttcattaccgctgagccatgatgggaactcTCCATAGATTTTATTTTTTGTATTAT
TTATTTATTTCCTGGCCAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               12-118, - strand, RNAz p=0.95427
               

               
               68-383, + strand, RNAz p=0.939219
               

               
               186-383, - strand, RNAz p=0.959722

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-118, - strand, RNAz p=0.95427
               

               
               68-383, + strand, RNAz p=0.939219
               

               
               186-383, - strand, RNAz p=0.959722

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-383, gnl|bosTau2|chr11 (22514889-22515258)
               

               
               1-383, gnl|canFam2|chr10 (48854112-48854636)
               

               
               1-383, gnl|dasNov1|scaffold_31995 (46245-45730)
               

               
               1-383, gnl|hg17|chr2 (43340114-43340653)
               

               
               1-383, gnl|Hg17|chr2 (43340386-43340755)
               

               
               1-383, gnl|loxAfr1|scaffold_178899 (3913-4477)
               

               
               1-383, gnl|mm7|chr17 (82455806-82456280)
               

               
               1-383, gnl|oryCun1|scaffold_206522 (41670-42131)
               

               
               1-383, gnl|panTro1|chr12 (44986404-44986943)
               

               
               1-383, gnl|rheMac2|chr13 (43317105-43317644)
               

               
               1-383, gnl|rn3|chr6 (7510555-7511016)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-383, gnl|bosTau2|chr11 (22514889-22515258)
               

               
               1-383, gnl|canFam2|chr10 (48854112-48854636)
               

               
               1-383, gnl|dasNov1|scaffold_31995 (46245-45730)
               

               
               1-383, gnl|hg17|chr2 (43340114-43340653)
               

               
               1-383, gnl|Hg17|chr2 (43340386-43340755)
               

               
               1-383, gnl|loxAfr1|scaffold_178899 (3913-4477)
               

               
               1-383, gnl|mm7|chr17 (82455806-82456280)
               

               
               1-383, gnl|oryCun1|scaffold_206522 (41670-42131)
               

               
               1-383, gnl|panTro1|chr12 (44986404-44986943)
               

               
               1-383, gnl|rheMac2|chr13 (43317105-43317644)
               

               
               1-383, gnl|rn3|chr6 (7510555-7511016)

	12-118, - strand, RNAz p=0.95427
	68-383, + strand, RNAz p=0.939219
	186-383, - strand, RNAz p=0.959722

	1-383, gnl\|bosTau2\|chr11 (22514889-22515258)
	1-383, gnl\|canFam2\|chr10 (48854112-48854636)
	1-383, gnl\|dasNov1\|scaffold_31995 (46245-45730)
	1-383, gnl\|hg17\|chr2 (43340114-43340653)
	1-383, gnl\|Hg17\|chr2 (43340386-43340755)
	1-383, gnl\|loxAfr1\|scaffold_178899 (3913-4477)
	1-383, gnl\|mm7\|chr17 (82455806-82456280)
	1-383, gnl\|oryCun1\|scaffold_206522 (41670-42131)
	1-383, gnl\|panTro1\|chr12 (44986404-44986943)
	1-383, gnl\|rheMac2\|chr13 (43317105-43317644)
	1-383, gnl\|rn3\|chr6 (7510555-7511016)