Non-Coding RNA Search

Pig3-SRG8007K14

Sequence:


               
               AAACTTGAAAAAACAAAAACAGTTAAGTATCTCCTTGTTTGGTTGGGATAATCCCATCTT
ATTCCTATCTCTATTAAGGAATTTATTAAATTGCATTATAATTATTGGTTAACTAGCTCC
TCCAATAAAATGAAAGTTCCTTGAGGGCATATTAATTAAAATTAATATCAATAAAATTTC
ACTGATCCTTGAAAGTAGTGTCCAAAAGTTCACTAATAAAAAATGAGTGGGTCAAATTTA
CTAGGTTAATGAAATAATTGGGGCTAGCTAGCACAGCTGGCCTAGAAGGGAGTTCCCATC
CAAACGTATCACCACCTGCCTGAGTTTTGGCAATTCCTGGTGGCAGTTATCTTTTATAGC
TTAAGTATTGAGGTTCACCTGCCATGTCTTTGCTTCCAAAGGCATATTTGTCTACTGTTT
CCCCAATTTCCCCATCCTGCCTTCACTTTCCTTACACATGACCTCTCTTTTCCCCAAATA
AAAAAAAAAATTAAATGCTATCTTTGAGAATGGGGGCTGGATGGAGAATAGGATGGCTAT
GTTTAATTGTCTTACTTCTAATTCATTGTCATTACCGGAGTTTTACTGTATTAGTTTCTC
AAAAATTGTTTGTTGAATGAATGAATAAATATAATTTGCCTCAGTGAATGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTGAAAAAACAAAAACAGTTAAGTATCTCCTTGTTTGGTTGGGATAATCCCATCTT
ATTCCTATCTCTATTAAGGAATTTATTAAATTGCATTATAATTATTGGTTAACTAGCTCC
TCCAATAAAATGAAAGTTCCTTGAGGGCATATTAATTAAAATTAATATCAATAAAATTTC
ACTGATCCTTGAAAGTAGTGTCCAAAAGTTCACTAATAAAAAATGAGTGGGTCAAATTTA
CTAGGTTAATGAAATAATTGGGGCTAGCTAGCACAGCTGGCCTAGAAGGGAGTTCCCATC
CAAACGTATCACCACCTGCCTGAGTTTTGGCAATTCCTGGTGGCAGTTATCTTTTATAGC
TTAAGTATTGAGGTTCACCTGCCATGTCTTTGCTTCCAAAGGCATATTTGTCTACTGTTT
CCCCAATTTCCCCATCCTGCCTTCACTTTCCTTACACATGACCTCTCTTTTCCCCAAATA
AAAAAAAAAATTAAATGCTATCTTTGAGAATGGGGGCTGGATGGAGAATAGGATGGCTAT
GTTTAATTGTCTTACTTCTAATTCATTGTCATTACCGGAGTTTTACTGTATTAGTTTCTC
AAAAATTGTTTGTTGAATGAATGAATAAATATAATTTGCCTCAGTGAATGCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-370, - strand, RNAz p=0.847447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-370, - strand, RNAz p=0.847447

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-370, gnl|bosTau2|chr3 (15798157-15798531)
               

               
               1-370, gnl|Hg17|chr1 (144581110-144580734)
               

               
               1-370, gnl|Mm7|chr3 (96819838-96820198)
               


               
               507-622, gnl|bosTau2|chr3 (15798857-15798969)
               

               
               507-622, gnl|Hg17|chr1 (144580469-144580356)
               

               
               507-622, gnl|Mm7|chr3 (96820462-96820578)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chr3 (15798157-15798531)
               

               
               1-370, gnl|Hg17|chr1 (144581110-144580734)
               

               
               1-370, gnl|Mm7|chr3 (96819838-96820198)
               


               
               507-622, gnl|bosTau2|chr3 (15798857-15798969)
               

               
               507-622, gnl|Hg17|chr1 (144580469-144580356)
               

               
               507-622, gnl|Mm7|chr3 (96820462-96820578)

	1-370, gnl\|bosTau2\|chr3 (15798157-15798531)
	1-370, gnl\|Hg17\|chr1 (144581110-144580734)
	1-370, gnl\|Mm7\|chr3 (96819838-96820198)

	507-622, gnl\|bosTau2\|chr3 (15798857-15798969)
	507-622, gnl\|Hg17\|chr1 (144580469-144580356)
	507-622, gnl\|Mm7\|chr3 (96820462-96820578)