Non-Coding RNA Search

Pig3-SRG8007P24

Sequence:


               
               GATTGACAGCTCAGAAAGCGTGGGGCTGGAGAATTTCCAGATCATCAAAAACTTCGTGAA
GAATCTGACAGACGGGGTTGATATGGACCTTGCCACGGCCCGCATAGGCATCATCAACTA
CAGCCATAAGGTGGAGGAGGTGGATCATCTGACACAGTTATCCAGCAAGGACGCCATCAA
GCGGGCGGTGGACAACATGCAGTATTGGGGGAAGGCACATACACGGCCACAGATATCCAC
GCCGCCAACCGCATGTTTGAAGCCTCCAGGCCGGAGGTGAAGAAGGTGGCCTTGGTCATC
ACAGATGGGCAGACAGATACCCGGGATGAAAAGAATATGACAGATGTGGTGAAGAACGCC
AGTGATATCAATGTGGAAATATTTGTGATTGGCGTGGTGAAGAAAAATGACCCCAACTTC
GAGATGTTCCACAAAGAAATGAATCTAATTGCTACCGACCCAGATAGTGAGCACGTTCAT
CAGTTTGATGACTTCATTACTCTTCAAGATACCCTGAAGCAAAAATTATTTAAAAAAAGT
TGTGAGGATTTTGAATCCTACCTCTTCCAAGTTTTGGGTTCACCACTGCTTGAACCTAGA
TTTGGGCTATCAGGGGAAGAACTCAGTGAATCCACTCCAGAGCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGACAGCTCAGAAAGCGTGGGGCTGGAGAATTTCCAGATCATCAAAAACTTCGTGAA
GAATCTGACAGACGGGGTTGATATGGACCTTGCCACGGCCCGCATAGGCATCATCAACTA
CAGCCATAAGGTGGAGGAGGTGGATCATCTGACACAGTTATCCAGCAAGGACGCCATCAA
GCGGGCGGTGGACAACATGCAGTATTGGGGGAAGGCACATACACGGCCACAGATATCCAC
GCCGCCAACCGCATGTTTGAAGCCTCCAGGCCGGAGGTGAAGAAGGTGGCCTTGGTCATC
ACAGATGGGCAGACAGATACCCGGGATGAAAAGAATATGACAGATGTGGTGAAGAACGCC
AGTGATATCAATGTGGAAATATTTGTGATTGGCGTGGTGAAGAAAAATGACCCCAACTTC
GAGATGTTCCACAAAGAAATGAATCTAATTGCTACCGACCCAGATAGTGAGCACGTTCAT
CAGTTTGATGACTTCATTACTCTTCAAGATACCCTGAAGCAAAAATTATTTAAAAAAAGT
TGTGAGGATTTTGAATCCTACCTCTTCCAAGTTTTGGGTTCACCACTGCTTGAACCTAGA
TTTGGGCTATCAGGGGAAGAACTCAGTGAATCCACTCCAGAGCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               279-398, + strand, RNAz p=0.542336

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, + strand, RNAz p=0.542336

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-511, gnl|bosTau2|chr4 (3811624-3812135)
               

               
               1-511, gnl|Hg17|chr7 (7186371-7185866)
               

               
               1-511, gnl|Mm7|chr6 (7972792-7972288)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-511, gnl|bosTau2|chr4 (3811624-3812135)
               

               
               1-511, gnl|Hg17|chr7 (7186371-7185866)
               

               
               1-511, gnl|Mm7|chr6 (7972792-7972288)

	1-511, gnl\|bosTau2\|chr4 (3811624-3812135)
	1-511, gnl\|Hg17\|chr7 (7186371-7185866)
	1-511, gnl\|Mm7\|chr6 (7972792-7972288)