Non-Coding RNA Search

Pig3-SRG8008C16

Sequence:


               
               TTAGGATATAAATTGTGTTTTGTATCAAGATGCCTGAGGTTTGAAAGCAGAATTGACCCT
CCTGAAGCAAGAGTTTCCAGGTAGCTCTGATTTTCTCTTTACCAGATGCTCCTTTAGTTA
CAGAAGTAAACAAGGGGCAAAACTAGTTGGATTCTTAGATTTCTTGTATCTGGATTAGAA
GCTCAGCAGCACAGGAAGCAAGAGTGCATATGTGCTTGCTTTGGAGGAGAGTCTACTTTC
CTGGTGAATACTGCAGTTAGTAGGAAATGCATTCCCTGCTCCATAGGTGACCCCACTTAA
ATACAGTTTCTTCTCTACTTCTCCACTGGACACAGGGATGGATAGGCTGCCTGGAGACTC
AGAAGACTAGAGTCCTTAAATTAAAAGTGGTGGGTGCTTTATACTAGATTGGGTTTTTTG
GTTTGTTTGTTTCAGGGCTTACTTACAATAATAATAAGGAAATCTTAAGTTCAAGTTGAC
ATGCACCATTTGCTTTATGTTTTGACAAGTTTCCAGTAGGGACAATTGTTGGCCACCATT
GATACTGCTTATCAGTGCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGATATAAATTGTGTTTTGTATCAAGATGCCTGAGGTTTGAAAGCAGAATTGACCCT
CCTGAAGCAAGAGTTTCCAGGTAGCTCTGATTTTCTCTTTACCAGATGCTCCTTTAGTTA
CAGAAGTAAACAAGGGGCAAAACTAGTTGGATTCTTAGATTTCTTGTATCTGGATTAGAA
GCTCAGCAGCACAGGAAGCAAGAGTGCATATGTGCTTGCTTTGGAGGAGAGTCTACTTTC
CTGGTGAATACTGCAGTTAGTAGGAAATGCATTCCCTGCTCCATAGGTGACCCCACTTAA
ATACAGTTTCTTCTCTACTTCTCCACTGGACACAGGGATGGATAGGCTGCCTGGAGACTC
AGAAGACTAGAGTCCTTAAATTAAAAGTGGTGGGTGCTTTATACTAGATTGGGTTTTTTG
GTTTGTTTGTTTCAGGGCTTACTTACAATAATAATAAGGAAATCTTAAGTTCAAGTTGAC
ATGCACCATTTGCTTTATGTTTTGACAAGTTTCCAGTAGGGACAATTGTTGGCCACCATT
GATACTGCTTATCAGTGCCCCAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               89-200, - strand, RNAz p=0.553751
               

               
               186-300, - strand, RNAz p=0.994433

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-200, - strand, RNAz p=0.553751
               

               
               186-300, - strand, RNAz p=0.994433

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-560, gnl|bosTau2|chr11 (9376470-9376999)
               

               
               1-560, gnl|canFam2|chr17 (52183289-52182605)
               

               
               1-560, gnl|echTel1|scaffold_319254 (47685-47023)
               

               
               1-560, gnl|hg17|chr2 (74088302-74089051)
               

               
               1-560, gnl|Hg17|chr2 (74088527-74089094)
               

               
               1-560, gnl|loxAfr1|scaffold_6673 (117170-117874)
               

               
               1-560, gnl|mm7|chr6 (83514497-83513840)
               

               
               1-560, gnl|Mm7|chr6 (83514278-83513816)
               

               
               1-560, gnl|oryCun1|scaffold_199376 (137659-138336)
               

               
               1-560, gnl|panTro1|chr12 (76493289-76494038)
               

               
               1-560, gnl|rheMac2|chr13 (74167760-74168522)
               

               
               1-560, gnl|rn3|chr4 (117951780-117951098)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr11 (9376470-9376999)
               

               
               1-560, gnl|canFam2|chr17 (52183289-52182605)
               

               
               1-560, gnl|echTel1|scaffold_319254 (47685-47023)
               

               
               1-560, gnl|hg17|chr2 (74088302-74089051)
               

               
               1-560, gnl|Hg17|chr2 (74088527-74089094)
               

               
               1-560, gnl|loxAfr1|scaffold_6673 (117170-117874)
               

               
               1-560, gnl|mm7|chr6 (83514497-83513840)
               

               
               1-560, gnl|Mm7|chr6 (83514278-83513816)
               

               
               1-560, gnl|oryCun1|scaffold_199376 (137659-138336)
               

               
               1-560, gnl|panTro1|chr12 (76493289-76494038)
               

               
               1-560, gnl|rheMac2|chr13 (74167760-74168522)
               

               
               1-560, gnl|rn3|chr4 (117951780-117951098)

	89-200, - strand, RNAz p=0.553751
	186-300, - strand, RNAz p=0.994433

	1-560, gnl\|bosTau2\|chr11 (9376470-9376999)
	1-560, gnl\|canFam2\|chr17 (52183289-52182605)
	1-560, gnl\|echTel1\|scaffold_319254 (47685-47023)
	1-560, gnl\|hg17\|chr2 (74088302-74089051)
	1-560, gnl\|Hg17\|chr2 (74088527-74089094)
	1-560, gnl\|loxAfr1\|scaffold_6673 (117170-117874)
	1-560, gnl\|mm7\|chr6 (83514497-83513840)
	1-560, gnl\|Mm7\|chr6 (83514278-83513816)
	1-560, gnl\|oryCun1\|scaffold_199376 (137659-138336)
	1-560, gnl\|panTro1\|chr12 (76493289-76494038)
	1-560, gnl\|rheMac2\|chr13 (74167760-74168522)
	1-560, gnl\|rn3\|chr4 (117951780-117951098)