Non-Coding RNA Search

Pig3-SRG8009D06

Sequence:


               
               AGCGCTTCATTAGCTGTAGTGCGCTGGGGCTGCATGACAGGATGTGCGCTGGTTGTCAAT
AGGAAGCGCGGCACGGTTGCCATCACCCAGCACAGTGAAAGGGTGACAGATTTCACTGTG
AATATGCCAAGGACACCTATAAATGTCCCCCGTGTCAGGCAGATGAAGTTCCTACTTTAT
TTCGCCACCCTGCAGGTAACTGAAACTCAATTACCGCTGCTGCTCACTCGGTTCCGTCCC
CATGAGTTTAGATAGCGCCAGTGCCTCTCAGAACTCCCCCGTCTGTTATCTTTGCTCTAC
CCCAGGGGTGAGCTTGCCAGAGCCCGCCAACCACCCCTTCTTTCCAGAACTCACTTATCT
GAACGTTTCAGCTCTCCCTGGAAGACCTTCTGTGTTGGGCTCCGGAGCCCCCATGCTGAG
GCTTATAATGAGGAAATGGCTTGAAGCATCCCCACACCTTGAGGTTTATTTGAATATGTC
AGCTCTCGGTTTAAGGTTCTGCAGAAGATACATGATGAAATTTCTTTTGAAATGAATTCC
TGTAGGAGAAAAATTGTATATGTGTGTGCTTTAAAATGAAATACCTTTACATAGACTTGC
TTGAACAATTACGTAAATGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCTTCATTAGCTGTAGTGCGCTGGGGCTGCATGACAGGATGTGCGCTGGTTGTCAAT
AGGAAGCGCGGCACGGTTGCCATCACCCAGCACAGTGAAAGGGTGACAGATTTCACTGTG
AATATGCCAAGGACACCTATAAATGTCCCCCGTGTCAGGCAGATGAAGTTCCTACTTTAT
TTCGCCACCCTGCAGGTAACTGAAACTCAATTACCGCTGCTGCTCACTCGGTTCCGTCCC
CATGAGTTTAGATAGCGCCAGTGCCTCTCAGAACTCCCCCGTCTGTTATCTTTGCTCTAC
CCCAGGGGTGAGCTTGCCAGAGCCCGCCAACCACCCCTTCTTTCCAGAACTCACTTATCT
GAACGTTTCAGCTCTCCCTGGAAGACCTTCTGTGTTGGGCTCCGGAGCCCCCATGCTGAG
GCTTATAATGAGGAAATGGCTTGAAGCATCCCCACACCTTGAGGTTTATTTGAATATGTC
AGCTCTCGGTTTAAGGTTCTGCAGAAGATACATGATGAAATTTCTTTTGAAATGAATTCC
TGTAGGAGAAAAATTGTATATGTGTGTGCTTTAAAATGAAATACCTTTACATAGACTTGC
TTGAACAATTACGTAAATGAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               123-282, - strand, RNAz p=0.655944
               

               
               323-440, - strand, RNAz p=0.796453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-282, - strand, RNAz p=0.655944
               

               
               323-440, - strand, RNAz p=0.796453

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-620, gnl|bosTau2|chr3 (62053770-62054389)
               

               
               4-620, gnl|Hg17|chr1 (54274347-54274965)
               

               
               4-620, gnl|Mm7|chr4 (106515897-106515301)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-620, gnl|bosTau2|chr3 (62053770-62054389)
               

               
               4-620, gnl|Hg17|chr1 (54274347-54274965)
               

               
               4-620, gnl|Mm7|chr4 (106515897-106515301)

	123-282, - strand, RNAz p=0.655944
	323-440, - strand, RNAz p=0.796453

	4-620, gnl\|bosTau2\|chr3 (62053770-62054389)
	4-620, gnl\|Hg17\|chr1 (54274347-54274965)
	4-620, gnl\|Mm7\|chr4 (106515897-106515301)