Pig3-SRG8009G12
|
CCATGGCGGTGGCTGTGGCTGTGGCGGGAGCAGTAACCGGGATGGAGCTGGGCCCCGCGG
AAGAGCTCGCCAAACTCGAATATCTGTCTTTGGTGTCGAAGGTTTGCACCGAGCTGGACA
ATCACTTGGGGATCAACGACAAGGATTTGGCTGAGTTTGTGATCAGTCTTGCTGAGAAAA
ACACCACCTTTGATACTTTTAAAGCTTCTCTGGTCAAAAATGGTGCAGAATTCACGGATT
CTCTCATTAGTAACTTGCTGCGTCTCATACAAACCATGCGGCCTCCATCAAAGCCTTCCA
CTAGCAAAGATCCAGTTGTTAAACCCAAAACTGAAAAAGAAAAGCTGAAGGAACTCTTCC
CAGTCCTTTGCCAACCAGACAACCCTTCTGTGCGGACCATGCTGGACGATGACGATGTGA
AAGTTGCCGTGGATGTCCTCAAAGATCTGGAGGCCTTGATGCCAAGCGCATCATGCCAGG
AACGGCACAGATACACCGAGCACCGGGACAAGACGAAGAAGAATAATCGGAGTCGAGAGC
GATACCGCGACCGCGATCGTGAGCGCGATAGAGACCACAAGCGGAGACACCGGTCCCGCT
CACGTTCCCGGACCCGGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCATGGCGGTGGCTGTGGCTGTGGCGGGAGCAGTAACCGGGATGGAGCTGGGCCCCGCGG
AAGAGCTCGCCAAACTCGAATATCTGTCTTTGGTGTCGAAGGTTTGCACCGAGCTGGACA
ATCACTTGGGGATCAACGACAAGGATTTGGCTGAGTTTGTGATCAGTCTTGCTGAGAAAA
ACACCACCTTTGATACTTTTAAAGCTTCTCTGGTCAAAAATGGTGCAGAATTCACGGATT
CTCTCATTAGTAACTTGCTGCGTCTCATACAAACCATGCGGCCTCCATCAAAGCCTTCCA
CTAGCAAAGATCCAGTTGTTAAACCCAAAACTGAAAAAGAAAAGCTGAAGGAACTCTTCC
CAGTCCTTTGCCAACCAGACAACCCTTCTGTGCGGACCATGCTGGACGATGACGATGTGA
AAGTTGCCGTGGATGTCCTCAAAGATCTGGAGGCCTTGATGCCAAGCGCATCATGCCAGG
AACGGCACAGATACACCGAGCACCGGGACAAGACGAAGAAGAATAATCGGAGTCGAGAGC
GATACCGCGACCGCGATCGTGAGCGCGATAGAGACCACAAGCGGAGACACCGGTCCCGCT
CACGTTCCCGGACCCGGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-159, gnl|bosTau2|chr19 (38705132-38704974) |
|
1-159, gnl|Hg17|chr17 (38916930-38917088) |
|
1-159, gnl|Mm7|chr11 (101842078-101842236) |
| |
|
387-506, gnl|bosTau2|chr19 (38698292-38698173) |
|
387-506, gnl|canFam2|chr9 (23077099-23076957) |
|
387-506, gnl|danRer3|chr12 (26229636-26229760) |
|
387-506, gnl|dasNov1|scaffold_55068 (5878-6015) |
|
387-506, gnl|echTel1|scaffold_302341 (8148-8011) |
|
387-506, gnl|galGal2|chr27 (2089668-2089804) |
|
387-506, gnl|hg17|chr17 (38925064-38925206) |
|
387-506, gnl|Hg17|chr17 (38925068-38925187) |
|
387-506, gnl|loxAfr1|scaffold_10507 (6610-6474) |
|
387-506, gnl|Mm7|chr11 (101846687-101846806) |
|
387-506, gnl|monDom2|scaffold_18 (53880404-53880543) |
|
387-506, gnl|oryCun1|scaffold_136321 (9727-9867) |
|
387-506, gnl|panTro1|chr19_random (19871647-19871789) |
|
387-506, gnl|rheMac2|chr16 (53507926-53508068) |
|
387-506, gnl|rn3|chr10 (90793857-90793998) |
|
387-506, gnl|xenTro1|scaffold_131 (722242-722360) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-159, gnl|bosTau2|chr19 (38705132-38704974) |
|
1-159, gnl|Hg17|chr17 (38916930-38917088) |
|
1-159, gnl|Mm7|chr11 (101842078-101842236) |
| |
|
387-506, gnl|bosTau2|chr19 (38698292-38698173) |
|
387-506, gnl|canFam2|chr9 (23077099-23076957) |
|
387-506, gnl|danRer3|chr12 (26229636-26229760) |
|
387-506, gnl|dasNov1|scaffold_55068 (5878-6015) |
|
387-506, gnl|echTel1|scaffold_302341 (8148-8011) |
|
387-506, gnl|galGal2|chr27 (2089668-2089804) |
|
387-506, gnl|hg17|chr17 (38925064-38925206) |
|
387-506, gnl|Hg17|chr17 (38925068-38925187) |
|
387-506, gnl|loxAfr1|scaffold_10507 (6610-6474) |
|
387-506, gnl|Mm7|chr11 (101846687-101846806) |
|
387-506, gnl|monDom2|scaffold_18 (53880404-53880543) |
|
387-506, gnl|oryCun1|scaffold_136321 (9727-9867) |
|
387-506, gnl|panTro1|chr19_random (19871647-19871789) |
|
387-506, gnl|rheMac2|chr16 (53507926-53508068) |
|
387-506, gnl|rn3|chr10 (90793857-90793998) |
|
387-506, gnl|xenTro1|scaffold_131 (722242-722360) |
