Non-Coding RNA Search

Pig3-SRG8009I02

Sequence:


               
               CTTTCTGACGAGCCCCAGTCTGCCTCTCCTTCGCCCAGCTACATGTGGTCCTCGAGTGCT
CCACCCCGATACTCTCCACCCTACTATCCGCCTTTTGAAAAGCCACCCCCTTACAGCCCC
TAAAGAATGCCTGCTGGCTGTTGAGATTGTTGTGGCTTTTGTATTTCTGCTTTAGTGGAA
GTGTGTAGGGTACAAAAGTTAAAGTCTGATTCTTGCGCCTAAAGTTTTCCGATGGCCTGC
AGGCTAGGGAAAGATAGAGAAGCTTATTTGTTATCAGTGCAGAGCTCCCAGGGCAGCGCA
CTCTCAGCAAGGCCCGAGAGCCATCCCAGCAAGAAATTTGTCATATATGGACCTGCATTA
CCCTATGGCTCCACCTCTGTATGCAGCAGAAGCGTGCCTGCCACCTGCTTCACTTTGTGC
AAACGGAGTGTTGTCCTCGGGCCCTTGGCAGATTGCCGCCCAGCACCTTGGTTGAAACAC
CTGGCTTGTAAGGCCCTATCTTTTCCTACCACTTAAGTCAATCCCTAAGGAAAATTTCCC
AGGTGATGGGGCTACATGGTAGTTCCAGTGCAGAGAGTTCTGGCTAAGATTTTGTTTGCC
CGTGTCTGGATGTTGAAAAAGAGCTGCCCGAATCTCTTACTCCTTTCTTCTCTGTATTGT
AAAAAAATGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTGACGAGCCCCAGTCTGCCTCTCCTTCGCCCAGCTACATGTGGTCCTCGAGTGCT
CCACCCCGATACTCTCCACCCTACTATCCGCCTTTTGAAAAGCCACCCCCTTACAGCCCC
TAAAGAATGCCTGCTGGCTGTTGAGATTGTTGTGGCTTTTGTATTTCTGCTTTAGTGGAA
GTGTGTAGGGTACAAAAGTTAAAGTCTGATTCTTGCGCCTAAAGTTTTCCGATGGCCTGC
AGGCTAGGGAAAGATAGAGAAGCTTATTTGTTATCAGTGCAGAGCTCCCAGGGCAGCGCA
CTCTCAGCAAGGCCCGAGAGCCATCCCAGCAAGAAATTTGTCATATATGGACCTGCATTA
CCCTATGGCTCCACCTCTGTATGCAGCAGAAGCGTGCCTGCCACCTGCTTCACTTTGTGC
AAACGGAGTGTTGTCCTCGGGCCCTTGGCAGATTGCCGCCCAGCACCTTGGTTGAAACAC
CTGGCTTGTAAGGCCCTATCTTTTCCTACCACTTAAGTCAATCCCTAAGGAAAATTTCCC
AGGTGATGGGGCTACATGGTAGTTCCAGTGCAGAGAGTTCTGGCTAAGATTTTGTTTGCC
CGTGTCTGGATGTTGAAAAAGAGCTGCCCGAATCTCTTACTCCTTTCTTCTCTGTATTGT
AAAAAAATGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-191, + strand, RNAz p=0.968797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-191, + strand, RNAz p=0.968797

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK056403, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK056403, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-665, gnl|bosTau2|chrX (1629986-1629300)
               

               
               1-665, gnl|Hg17|chrX (119176729-119176033)
               

               
               1-665, gnl|Mm7|chrX (33291872-33291179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-665, gnl|bosTau2|chrX (1629986-1629300)
               

               
               1-665, gnl|Hg17|chrX (119176729-119176033)
               

               
               1-665, gnl|Mm7|chrX (33291872-33291179)

	1-665, gnl\|bosTau2\|chrX (1629986-1629300)
	1-665, gnl\|Hg17\|chrX (119176729-119176033)
	1-665, gnl\|Mm7\|chrX (33291872-33291179)