Non-Coding RNA Search

Pig3-SRG8009O02

Sequence:


               
               GGATCATGCCGCCTTTGAAAATCCAGCTGCATTTCATGAGCAGAGAAGGAGCTTGGAGCG
GGCCAGGACAGAGGACTATCTGAAACGGAAGATTCGTTCCCGGCCGGAGAGATCGGAGCT
GGTCAGGATGCACATTTTGGAAGAGACCTCGGCTGAGCCTTCCCTCCAGGCCAAACAGCT
GAAGCTGAAGAGAGCCAGGCTGGCCGATGACCTCAACGAGAAGATTGCACAGAGGCCTGG
CCCCATGGAGCTGGTGGAGAAGAATATCCTGCCTGTGGAGTCCAGCCTGAAGGAAGCCAT
CATTGTGGGACAGGTAAACTACCCGAAAGTAGCGGACAGCTCTTCCTTTGATGAGGACAG
CAGTGACGCCTTATCGCCTGAGCAGCCTGCCAGCCATGAGTCCCATGGCTCAGTGCCATC
ACCCCTGGAAGCCCGAGGCAGCGAGTCCCTGCCCACTGCCACCTCCGTGTCCCCCACTCA
GGTTGTGTCTCAACTCCCGGTGGGCCCGGAGTCCGGNGAGACGCTGTTCCTAGCGGAGCA
GCCCCCTCTGCCTCCCAGCCTCAGCAGCGGAACTGCCGTCCCCACCAAGCCCCTTCCCAC
GCTCATTAAGCAAAGCCAACCCAAGTCTGCCGGTGAGAAGTCACAACGCAGCAAGAAAGC
CAAGGAGCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCATGCCGCCTTTGAAAATCCAGCTGCATTTCATGAGCAGAGAAGGAGCTTGGAGCG
GGCCAGGACAGAGGACTATCTGAAACGGAAGATTCGTTCCCGGCCGGAGAGATCGGAGCT
GGTCAGGATGCACATTTTGGAAGAGACCTCGGCTGAGCCTTCCCTCCAGGCCAAACAGCT
GAAGCTGAAGAGAGCCAGGCTGGCCGATGACCTCAACGAGAAGATTGCACAGAGGCCTGG
CCCCATGGAGCTGGTGGAGAAGAATATCCTGCCTGTGGAGTCCAGCCTGAAGGAAGCCAT
CATTGTGGGACAGGTAAACTACCCGAAAGTAGCGGACAGCTCTTCCTTTGATGAGGACAG
CAGTGACGCCTTATCGCCTGAGCAGCCTGCCAGCCATGAGTCCCATGGCTCAGTGCCATC
ACCCCTGGAAGCCCGAGGCAGCGAGTCCCTGCCCACTGCCACCTCCGTGTCCCCCACTCA
GGTTGTGTCTCAACTCCCGGTGGGCCCGGAGTCCGGNGAGACGCTGTTCCTAGCGGAGCA
GCCCCCTCTGCCTCCCAGCCTCAGCAGCGGAACTGCCGTCCCCACCAAGCCCCTTCCCAC
GCTCATTAAGCAAAGCCAACCCAAGTCTGCCGGTGAGAAGTCACAACGCAGCAAGAAAGC
CAAGGAGCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-305, - strand, RNAz p=0.797328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-305, - strand, RNAz p=0.797328

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               143-275, - strand, RNAmicro p=0.998468

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               143-275, - strand, RNAmicro p=0.998468

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               142-305, gnl|bosTau2|chr5 (70069098-70069261)
               

               
               142-305, gnl|Hg17|chr22 (39150273-39150110)
               

               
               142-305, gnl|Mm7|chr15 (81107041-81106878)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-305, gnl|bosTau2|chr5 (70069098-70069261)
               

               
               142-305, gnl|Hg17|chr22 (39150273-39150110)
               

               
               142-305, gnl|Mm7|chr15 (81107041-81106878)

	142-305, gnl\|bosTau2\|chr5 (70069098-70069261)
	142-305, gnl\|Hg17\|chr22 (39150273-39150110)
	142-305, gnl\|Mm7\|chr15 (81107041-81106878)