Non-Coding RNA Search

Pig3-SRG8012A08

Sequence:


               
               GGTCAAGGTGATTGTGCTAGCTTTCTCTTATCCGATATGAATTATTTAGATTTTCAAGGC
ATTTTCTTGATAAACAAAAGGCTATTTTTAAGTACCGAGAGGAGGCGGCGGCCGCAAGAG
GGTTAGTGCGGGAATTCCCAAAGCTCTTTGTTGGTAGTGCCAGAGTGGGGCATTTGCCCT
CGTTTTTCTATGTGCAGAATAGAGGCTCTCTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCAAGGTGATTGTGCTAGCTTTCTCTTATCCGATATGAATTATTTAGATTTTCAAGGC
ATTTTCTTGATAAACAAAAGGCTATTTTTAAGTACCGAGAGGAGGCGGCGGCCGCAAGAG
GGTTAGTGCGGGAATTCCCAAAGCTCTTTGTTGGTAGTGCCAGAGTGGGGCATTTGCCCT
CGTTTTTCTATGTGCAGAATAGAGGCTCTCTCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               101-215, + strand, RNAz p=0.749724

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-215, + strand, RNAz p=0.749724

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-215, gnl|bosTau2|chr11 (56064087-56064302)
               

               
               1-215, gnl|canFam2|chr17 (21231448-21232060)
               

               
               1-215, gnl|dasNov1|scaffold_40895 (6106-5531)
               

               
               1-215, gnl|echTel1|scaffold_267232 (3536-4126)
               

               
               1-215, gnl|hg17|chr2 (23841797-23842383)
               

               
               1-215, gnl|Hg17|chr2 (23841837-23842049)
               

               
               1-215, gnl|loxAfr1|scaffold_5370 (55327-55941)
               

               
               1-215, gnl|mm7|chr12 (5021739-5021123)
               

               
               1-215, gnl|Mm7|chr12 (5021697-5021482)
               

               
               1-215, gnl|oryCun1|scaffold_187456 (9136-8521)
               

               
               1-215, gnl|panTro1|chr12 (24726476-24727063)
               

               
               1-215, gnl|rheMac2|chr13 (23617095-23617684)
               

               
               1-215, gnl|rn3|chr6 (28393761-28393144)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-215, gnl|bosTau2|chr11 (56064087-56064302)
               

               
               1-215, gnl|canFam2|chr17 (21231448-21232060)
               

               
               1-215, gnl|dasNov1|scaffold_40895 (6106-5531)
               

               
               1-215, gnl|echTel1|scaffold_267232 (3536-4126)
               

               
               1-215, gnl|hg17|chr2 (23841797-23842383)
               

               
               1-215, gnl|Hg17|chr2 (23841837-23842049)
               

               
               1-215, gnl|loxAfr1|scaffold_5370 (55327-55941)
               

               
               1-215, gnl|mm7|chr12 (5021739-5021123)
               

               
               1-215, gnl|Mm7|chr12 (5021697-5021482)
               

               
               1-215, gnl|oryCun1|scaffold_187456 (9136-8521)
               

               
               1-215, gnl|panTro1|chr12 (24726476-24727063)
               

               
               1-215, gnl|rheMac2|chr13 (23617095-23617684)
               

               
               1-215, gnl|rn3|chr6 (28393761-28393144)

	1-215, gnl\|bosTau2\|chr11 (56064087-56064302)
	1-215, gnl\|canFam2\|chr17 (21231448-21232060)
	1-215, gnl\|dasNov1\|scaffold_40895 (6106-5531)
	1-215, gnl\|echTel1\|scaffold_267232 (3536-4126)
	1-215, gnl\|hg17\|chr2 (23841797-23842383)
	1-215, gnl\|Hg17\|chr2 (23841837-23842049)
	1-215, gnl\|loxAfr1\|scaffold_5370 (55327-55941)
	1-215, gnl\|mm7\|chr12 (5021739-5021123)
	1-215, gnl\|Mm7\|chr12 (5021697-5021482)
	1-215, gnl\|oryCun1\|scaffold_187456 (9136-8521)
	1-215, gnl\|panTro1\|chr12 (24726476-24727063)
	1-215, gnl\|rheMac2\|chr13 (23617095-23617684)
	1-215, gnl\|rn3\|chr6 (28393761-28393144)