Non-Coding RNA Search

Pig3-SRG8012F13

Sequence:


               
               TTGCGACAGCCATCGGTGGGACGTGAGATCCCAGTGGCAGAAGATGTGTCCTCTCCTGAA
TCAGTGCTGCTCTTTGGGAATCATGTTCTCGTCTGGCCGTGCCGTCTCCCTTGCTGCCTG
TCTGTAAGGATGAAGTATAAAAGTTGACAGAATGCCCACGCATGCAGGACTGCCCGAGAG
AGGCTGTGTGAGAAGGCCTGAGAGCAGATGGAAAGTTTATTGGCATTCATTAAAATTGAT
TTGACATAACATGGGCGGTGTGGTGCATGGTCAGCGGCCTTTTTTGTAAAATGGTCATGT
ATCAGGTGTGGGACAGACGGCGCAAGGTTGATCATGACCGGGTTCTGTTAGTCACAGGAC
ACTGCTTGGCATGTTTCCATTGGCCCCTACTGTGTGGAGAAAGTCAATGAGAAGATGCAC
CTGTCAAAATTAATTTTCAGGGTTCAGTAACTTCATGCAGGATTTTAAGACAGGAATAAA
TGATGAACATTCTCAAGTACTCTTTCCTGATTTTAACCTTCTCCCTCAGACATGAGGTGT
TCAAGAGATCATTGTCCTTTACTAAGACTTAAGATCGATGTTTAAAATATAACCGCTCAT
TATCTTCAATTATCTCTGACCTTCACAGAGTGCTGTCGCATGGTCTCAATTGAATCCCCA
AAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCGACAGCCATCGGTGGGACGTGAGATCCCAGTGGCAGAAGATGTGTCCTCTCCTGAA
TCAGTGCTGCTCTTTGGGAATCATGTTCTCGTCTGGCCGTGCCGTCTCCCTTGCTGCCTG
TCTGTAAGGATGAAGTATAAAAGTTGACAGAATGCCCACGCATGCAGGACTGCCCGAGAG
AGGCTGTGTGAGAAGGCCTGAGAGCAGATGGAAAGTTTATTGGCATTCATTAAAATTGAT
TTGACATAACATGGGCGGTGTGGTGCATGGTCAGCGGCCTTTTTTGTAAAATGGTCATGT
ATCAGGTGTGGGACAGACGGCGCAAGGTTGATCATGACCGGGTTCTGTTAGTCACAGGAC
ACTGCTTGGCATGTTTCCATTGGCCCCTACTGTGTGGAGAAAGTCAATGAGAAGATGCAC
CTGTCAAAATTAATTTTCAGGGTTCAGTAACTTCATGCAGGATTTTAAGACAGGAATAAA
TGATGAACATTCTCAAGTACTCTTTCCTGATTTTAACCTTCTCCCTCAGACATGAGGTGT
TCAAGAGATCATTGTCCTTTACTAAGACTTAAGATCGATGTTTAAAATATAACCGCTCAT
TATCTTCAATTATCTCTGACCTTCACAGAGTGCTGTCGCATGGTCTCAATTGAATCCCCA
AAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               316-428, + strand, RNAz p=0.91265

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-428, + strand, RNAz p=0.91265

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               158-660, gnl|bosTau2|chr16 (5045560-5046046)
               

               
               158-660, gnl|Hg17|chr1 (189882777-189883261)
               

               
               158-660, gnl|Mm7|chr1 (143571995-143571578)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-660, gnl|bosTau2|chr16 (5045560-5046046)
               

               
               158-660, gnl|Hg17|chr1 (189882777-189883261)
               

               
               158-660, gnl|Mm7|chr1 (143571995-143571578)

	158-660, gnl\|bosTau2\|chr16 (5045560-5046046)
	158-660, gnl\|Hg17\|chr1 (189882777-189883261)
	158-660, gnl\|Mm7\|chr1 (143571995-143571578)