Non-Coding RNA Search

Pig3-SRG8013A24

Sequence:


               
               TTTTGTTTCTGTGATTGCCACGTGGGACCCGGTGTGATCTGGAAACCCTCCTGGTGGGTG
GAGTGGTTGTACGGCCACAACACGCGGGAAGGACTGGGCGGTCACGTTTTGAAAAGCAAC
TGCACAAATTCCTTACTATGATTGTGTGGAGGTTAGTTGGCATGAACCTTCATTGTAAAT
GGGTGTTGATTTTTTTTTTTAAATAATACTTTCATCAGTCCTGACTATGCTGCGTTTTGT
AAAAGCTTTTTCCCCCTCTGTTCTGTTCATGTAACACAGATAATCATTGCACTTGGTACC
ATGCTTTACCTCATTTCAAGGAAAATATGCTTAACCGAGAGGAAAAAATGTGGTTTGGCC
TCGCTGCTGTTTTGATAAACCGAATTTGAAAAAAAGATAATTATAATGCCTGCAATGTGT
CATATACTTGCACAACTTAAATAGGTCATTTTTGTCTGTGGCATTTTTACTGTTTGTGAA
AGTATGACAAAGATTTGTTAACTGAACTCTTAATTATGTTTTAAAGATGTTTGTTAACTT
TTTCTTTTCTCTTTTACGTTATGTGAAATGATTAAATTTAGAACAACCTCTAACACTCCT
GTAAATTATCTTTTAAAATGCTAGTATTTTTCCTCTCTTAATAATAGCTTGCCCTCAGAA
AGATTCAAACTACCCTGCCTAAATAGCAAGAGACTGGGAGCTACTCTGGTTCTGTCGGTT
CAGTTCATAAGTACAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTTCTGTGATTGCCACGTGGGACCCGGTGTGATCTGGAAACCCTCCTGGTGGGTG
GAGTGGTTGTACGGCCACAACACGCGGGAAGGACTGGGCGGTCACGTTTTGAAAAGCAAC
TGCACAAATTCCTTACTATGATTGTGTGGAGGTTAGTTGGCATGAACCTTCATTGTAAAT
GGGTGTTGATTTTTTTTTTTAAATAATACTTTCATCAGTCCTGACTATGCTGCGTTTTGT
AAAAGCTTTTTCCCCCTCTGTTCTGTTCATGTAACACAGATAATCATTGCACTTGGTACC
ATGCTTTACCTCATTTCAAGGAAAATATGCTTAACCGAGAGGAAAAAATGTGGTTTGGCC
TCGCTGCTGTTTTGATAAACCGAATTTGAAAAAAAGATAATTATAATGCCTGCAATGTGT
CATATACTTGCACAACTTAAATAGGTCATTTTTGTCTGTGGCATTTTTACTGTTTGTGAA
AGTATGACAAAGATTTGTTAACTGAACTCTTAATTATGTTTTAAAGATGTTTGTTAACTT
TTTCTTTTCTCTTTTACGTTATGTGAAATGATTAAATTTAGAACAACCTCTAACACTCCT
GTAAATTATCTTTTAAAATGCTAGTATTTTTCCTCTCTTAATAATAGCTTGCCCTCAGAA
AGATTCAAACTACCCTGCCTAAATAGCAAGAGACTGGGAGCTACTCTGGTTCTGTCGGTT
CAGTTCATAAGTACAATTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               238-355, - strand, RNAz p=0.998153
               

               
               583-702, - strand, RNAz p=0.666915

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-355, - strand, RNAz p=0.998153
               

               
               583-702, - strand, RNAz p=0.666915

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-739, gnl|bosTau2|chr21 (40010730-40011468)
               

               
               1-739, gnl|Hg17|chr14 (94623972-94623254)
               

               
               1-739, gnl|Mm7|chr12 (102183536-102182908)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-739, gnl|bosTau2|chr21 (40010730-40011468)
               

               
               1-739, gnl|Hg17|chr14 (94623972-94623254)
               

               
               1-739, gnl|Mm7|chr12 (102183536-102182908)

	238-355, - strand, RNAz p=0.998153
	583-702, - strand, RNAz p=0.666915

	1-739, gnl\|bosTau2\|chr21 (40010730-40011468)
	1-739, gnl\|Hg17\|chr14 (94623972-94623254)
	1-739, gnl\|Mm7\|chr12 (102183536-102182908)