Pig3-SRG8014C20
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGATACCCTGGCCTGCCCTCGGAGCTTGAGGTGAGCCGTTCGGTGGAGGAGTTGCGGGC ACTGCTGAGCCCCCAGCCCGGCGGGGCCTTTGATCGAATCCTGAACAGCCTCACTGAGTG GGCTCTTGGTCAGGACACTCATGACAGCCTCAAGGTGGGAAGTGGAGAGGTAGCAGGCTG GAGCAGGCAGGGACAGGCTTGTCCCCAGCACCCTGACCCCTTCGGCCCTGACCCCACCTC AGATCTGGTTCAACAACAAGGGCTGGCACGCCATGGTGGCCTTTGTCAACCGAGCCAACA ATGCTCTCCTACATGCCCGCCTGCCACCAGGCCACGCCCGCCACAACCATAGCATCACCA TGCTCAACCACCCCCTGAACCTCACCAAGGAGCAGCTGTCTGAGGTCACGTTGATGGCTT CCTCGGTGGACGTACTTGTCTCCATCTGTGTGGTTTTTGCCATGTCCTTCGTCCCGGCCA GCTTCACCCTGGTCCTCATTGATGAGCGTGTCACCCGAGCCAAACACCTGCAGTATGTTG GGGGGCTGCCCCCCACTCTCTACTGGCTTGGCAACTTCCTCTGGGACATGTGTAACTACT TGGTGCCAGTGTGCATCGTGGTGCTCATCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGATACCCTGGCCTGCCCTCGGAGCTTGAGGTGAGCCGTTCGGTGGAGGAGTTGCGGGC ACTGCTGAGCCCCCAGCCCGGCGGGGCCTTTGATCGAATCCTGAACAGCCTCACTGAGTG GGCTCTTGGTCAGGACACTCATGACAGCCTCAAGGTGGGAAGTGGAGAGGTAGCAGGCTG GAGCAGGCAGGGACAGGCTTGTCCCCAGCACCCTGACCCCTTCGGCCCTGACCCCACCTC AGATCTGGTTCAACAACAAGGGCTGGCACGCCATGGTGGCCTTTGTCAACCGAGCCAACA ATGCTCTCCTACATGCCCGCCTGCCACCAGGCCACGCCCGCCACAACCATAGCATCACCA TGCTCAACCACCCCCTGAACCTCACCAAGGAGCAGCTGTCTGAGGTCACGTTGATGGCTT CCTCGGTGGACGTACTTGTCTCCATCTGTGTGGTTTTTGCCATGTCCTTCGTCCCGGCCA GCTTCACCCTGGTCCTCATTGATGAGCGTGTCACCCGAGCCAAACACCTGCAGTATGTTG GGGGGCTGCCCCCCACTCTCTACTGGCTTGGCAACTTCCTCTGGGACATGTGTAACTACT TGGTGCCAGTGTGCATCGTGGTGCTCATCTT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 238-357, - strand, RNAz p=0.736913 | |
| 471-590, - strand, RNAz p=0.991764 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 238-357, - strand, RNAz p=0.736913 | |
| 471-590, - strand, RNAz p=0.991764 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 471-590, DA263092 BRCAN2 Homo sapiens cDNA clone BRCAN2015717 5', mRNA (dbj|DA263092.1|), blast E-value=9e-27, identity=88.33% | |
| 471-590, yo66h03.y5 Soares breast 3NbHBst Homo sapiens cDNA clone (gb|AI733552.1|), blast E-value=9e-27, identity=88.33% | |
| 471-590, 287442 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF776598.1|), blast E-value=1e-38, identity=92.5% | |
| 471-590, PM4-MT0109-051000-007-d10 MT0109 Homo sapiens cDNA, mRNA sequence (gb|BF890779.1|), blast E-value=9e-27, identity=89.17% | |
| 471-590, 55052443H1 FLP Homo sapiens cDNA, mRNA sequence (gb|CD629698.1|), blast E-value=9e-27, identity=88.33% | |
| 471-590, 55052483J1 FLP Homo sapiens cDNA, mRNA sequence (gb|CD629701.1|), blast E-value=2e-24, identity=87.5% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 471-590, DA263092 BRCAN2 Homo sapiens cDNA clone BRCAN2015717 5', mRNA (dbj|DA263092.1|), blast E-value=9e-27, identity=88.33% | |
| 471-590, yo66h03.y5 Soares breast 3NbHBst Homo sapiens cDNA clone (gb|AI733552.1|), blast E-value=9e-27, identity=88.33% | |
| 471-590, 287442 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF776598.1|), blast E-value=1e-38, identity=92.5% | |
| 471-590, PM4-MT0109-051000-007-d10 MT0109 Homo sapiens cDNA, mRNA sequence (gb|BF890779.1|), blast E-value=9e-27, identity=89.17% | |
| 471-590, 55052443H1 FLP Homo sapiens cDNA, mRNA sequence (gb|CD629698.1|), blast E-value=9e-27, identity=88.33% | |
| 471-590, 55052483J1 FLP Homo sapiens cDNA, mRNA sequence (gb|CD629701.1|), blast E-value=2e-24, identity=87.5% |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-405, gnl|bosTau2|chr7 (10313158-10313560) | |
| 1-405, gnl|Hg17|chr19 (1007089-1007491) | |
| 1-405, gnl|Mm7|chr10 (79788703-79789106) | |
| 413-590, gnl|bosTau2|chr7 (10313989-10314166) | |
| 413-590, gnl|canFam2|chr20 (60813927-60813726) | |
| 413-590, gnl|canFam2|chr9 (51959525-51959350) | |
| 413-590, gnl|danRer3|chr1 (51872048-51871856) | |
| 413-590, gnl|danRer3|chr5 (14071634-14071814) | |
| 413-590, gnl|dasNov1|scaffold_981 (59754-59551) | |
| 413-590, gnl|dasNov1|scaffold_981 (59551-59715) | |
| 413-590, gnl|echTel1|scaffold_130949 (432-257) | |
| 413-590, gnl|echTel1|scaffold_322009 (80008-79818) | |
| 413-590, gnl|fr1|chrUn (88691787-88691586) | |
| 413-590, gnl|fr1|chrUn (84094863-84095050) | |
| 413-590, gnl|galGal2|chrUn (36415213-36415388) | |
| 413-590, gnl|galGal2|chrZ (26525743-26525538) | |
| 413-590, gnl|hg17|chr19 (1007890-1008098) | |
| 413-590, gnl|Hg17|chr19 (1007906-1008083) | |
| 413-590, gnl|hg17|chr9 (137182127-137182307) | |
| 413-590, gnl|loxAfr1|scaffold_2236 (77826-78037) | |
| 413-590, gnl|loxAfr1|scaffold_35256 (15481-15639) | |
| 413-590, gnl|mm7|chr10 (79789871-79790055) | |
| 413-590, gnl|Mm7|chr10 (79789874-79790051) | |
| 413-590, gnl|mm7|chr2 (25451558-25451383) | |
| 413-590, gnl|monDom2|scaffold_1 (188277155-188276980) | |
| 413-590, gnl|monDom2|scaffold_75 (7126886-7126682) | |
| 413-590, gnl|oryCun1|scaffold_173898 (20650-20433) | |
| 413-590, gnl|oryCun1|scaffold_173898 (20443-20607) | |
| 413-590, gnl|panTro1|chr11 (121954719-121954901) | |
| 413-590, gnl|panTro1|chr20 (1065607-1065815) | |
| 413-590, gnl|rheMac2|chr15 (1248252-1248072) | |
| 413-590, gnl|rheMac2|chr19 (802908-803116) | |
| 413-590, gnl|rn3|chr3 (3611169-3610994) | |
| 413-590, gnl|rn3|chr7 (11209264-11209074) | |
| 413-590, gnl|tetNig1|chrUn_random (47507602-47507812) | |
| 413-590, gnl|tetNig1|chrUn_random (99489376-99489556) | |
| 413-590, gnl|xenTro1|scaffold_302 (1283552-1283727) | |
| 413-590, gnl|xenTro1|scaffold_415 (1016166-1016362) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-405, gnl|bosTau2|chr7 (10313158-10313560) | |
| 1-405, gnl|Hg17|chr19 (1007089-1007491) | |
| 1-405, gnl|Mm7|chr10 (79788703-79789106) | |
| 413-590, gnl|bosTau2|chr7 (10313989-10314166) | |
| 413-590, gnl|canFam2|chr20 (60813927-60813726) | |
| 413-590, gnl|canFam2|chr9 (51959525-51959350) | |
| 413-590, gnl|danRer3|chr1 (51872048-51871856) | |
| 413-590, gnl|danRer3|chr5 (14071634-14071814) | |
| 413-590, gnl|dasNov1|scaffold_981 (59754-59551) | |
| 413-590, gnl|dasNov1|scaffold_981 (59551-59715) | |
| 413-590, gnl|echTel1|scaffold_130949 (432-257) | |
| 413-590, gnl|echTel1|scaffold_322009 (80008-79818) | |
| 413-590, gnl|fr1|chrUn (88691787-88691586) | |
| 413-590, gnl|fr1|chrUn (84094863-84095050) | |
| 413-590, gnl|galGal2|chrUn (36415213-36415388) | |
| 413-590, gnl|galGal2|chrZ (26525743-26525538) | |
| 413-590, gnl|hg17|chr19 (1007890-1008098) | |
| 413-590, gnl|Hg17|chr19 (1007906-1008083) | |
| 413-590, gnl|hg17|chr9 (137182127-137182307) | |
| 413-590, gnl|loxAfr1|scaffold_2236 (77826-78037) | |
| 413-590, gnl|loxAfr1|scaffold_35256 (15481-15639) | |
| 413-590, gnl|mm7|chr10 (79789871-79790055) | |
| 413-590, gnl|Mm7|chr10 (79789874-79790051) | |
| 413-590, gnl|mm7|chr2 (25451558-25451383) | |
| 413-590, gnl|monDom2|scaffold_1 (188277155-188276980) | |
| 413-590, gnl|monDom2|scaffold_75 (7126886-7126682) | |
| 413-590, gnl|oryCun1|scaffold_173898 (20650-20433) | |
| 413-590, gnl|oryCun1|scaffold_173898 (20443-20607) | |
| 413-590, gnl|panTro1|chr11 (121954719-121954901) | |
| 413-590, gnl|panTro1|chr20 (1065607-1065815) | |
| 413-590, gnl|rheMac2|chr15 (1248252-1248072) | |
| 413-590, gnl|rheMac2|chr19 (802908-803116) | |
| 413-590, gnl|rn3|chr3 (3611169-3610994) | |
| 413-590, gnl|rn3|chr7 (11209264-11209074) | |
| 413-590, gnl|tetNig1|chrUn_random (47507602-47507812) | |
| 413-590, gnl|tetNig1|chrUn_random (99489376-99489556) | |
| 413-590, gnl|xenTro1|scaffold_302 (1283552-1283727) | |
| 413-590, gnl|xenTro1|scaffold_415 (1016166-1016362) |