Non-Coding RNA Search

Pig3-SRG8014E19

Sequence:


               
               GCCCCACAATCCCAACCATTGTTTTGGATTTTGGGTCCCAAGGTGTTGCCTGCACCTGGC
CCTGCGCTGCAGAGTGGCTGTGTACCTGTGGGTCTTAAGTCACTGGCCCCAGCCAGCATT
GTAGGCAGAAACTTTCTCTGGAGATGGGAGAAGGAGAGGTGTGGTCTATAGCACATGGGG
GGCAGACACTGAGGAAAGACTAGAAGAAGGAGAAATCAGGGCACTCACCGCTGAGATTAT
AGGTTCCTTGGGGAACACAGACCTTACCTAGCTCTGTTTTCTCTATTTCCAGTCCTGTTT
GTCATGAATTTTTTTCCCCTTGAATTGAAAACTAAAGAGCTTTTCTGTCTTCAGCCAGGC
TCTCCTTAGTGTGGGTGGCTTAATAAGAGTTAGAAGAAGTTATATGACCAGCCGGTCATT
CCCCTGACAGATAATCCCTGGGAGGAGGTAGAATTTTAGGGTCCTTATTTCAGTTTTCTC
CTCTTTTGGGGTCCTGTGAGAAACAGGAATGACCTCCTTAATGAGGTGAGCTCAGGAGAG
GCCTTTCTCCATCCTCTTTTATTATTATGCCTTTGAGAGGAAAAATGAAAAGTGCCAGAG
GAAATTACATCTAGAAATCCAAAGGTGAATAGGGGAGGAAGTGTGGGCCTGCCTCCCATT
TTATGAGATGTGCTCTCTTCGCTGGCATGATTTGATTTTTAAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCACAATCCCAACCATTGTTTTGGATTTTGGGTCCCAAGGTGTTGCCTGCACCTGGC
CCTGCGCTGCAGAGTGGCTGTGTACCTGTGGGTCTTAAGTCACTGGCCCCAGCCAGCATT
GTAGGCAGAAACTTTCTCTGGAGATGGGAGAAGGAGAGGTGTGGTCTATAGCACATGGGG
GGCAGACACTGAGGAAAGACTAGAAGAAGGAGAAATCAGGGCACTCACCGCTGAGATTAT
AGGTTCCTTGGGGAACACAGACCTTACCTAGCTCTGTTTTCTCTATTTCCAGTCCTGTTT
GTCATGAATTTTTTTCCCCTTGAATTGAAAACTAAAGAGCTTTTCTGTCTTCAGCCAGGC
TCTCCTTAGTGTGGGTGGCTTAATAAGAGTTAGAAGAAGTTATATGACCAGCCGGTCATT
CCCCTGACAGATAATCCCTGGGAGGAGGTAGAATTTTAGGGTCCTTATTTCAGTTTTCTC
CTCTTTTGGGGTCCTGTGAGAAACAGGAATGACCTCCTTAATGAGGTGAGCTCAGGAGAG
GCCTTTCTCCATCCTCTTTTATTATTATGCCTTTGAGAGGAAAAATGAAAAGTGCCAGAG
GAAATTACATCTAGAAATCCAAAGGTGAATAGGGGAGGAAGTGTGGGCCTGCCTCCCATT
TTATGAGATGTGCTCTCTTCGCTGGCATGATTTGATTTTTAAACTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-99, - strand, RNAz p=0.779832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-99, - strand, RNAz p=0.779832

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-704, gnl|bosTau2|chr16 (44943833-44943120)
               

               
               1-704, gnl|canFam2|chr7 (27092193-27091388)
               

               
               1-704, gnl|dasNov1|scaffold_577 (44726-45513)
               

               
               1-704, gnl|echTel1|scaffold_291942 (44767-45530)
               

               
               1-704, gnl|hg17|chr1 (172022202-172022962)
               

               
               1-704, gnl|Hg17|chr1 (172023141-172022455)
               

               
               1-704, gnl|loxAfr1|scaffold_1013 (152984-153726)
               

               
               1-704, gnl|mm7|chr1 (159887763-159887052)
               

               
               1-704, gnl|Mm7|chr1 (159886893-159887526)
               

               
               1-704, gnl|monDom2|scaffold_16 (26536470-26537197)
               

               
               1-704, gnl|oryCun1|scaffold_206247 (12461-13216)
               

               
               1-704, gnl|panTro1|chr1 (154421636-154422398)
               

               
               1-704, gnl|rheMac2|chr1 (204920668-204921430)
               

               
               1-704, gnl|rn3|chr13 (75360609-75359893)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-704, gnl|bosTau2|chr16 (44943833-44943120)
               

               
               1-704, gnl|canFam2|chr7 (27092193-27091388)
               

               
               1-704, gnl|dasNov1|scaffold_577 (44726-45513)
               

               
               1-704, gnl|echTel1|scaffold_291942 (44767-45530)
               

               
               1-704, gnl|hg17|chr1 (172022202-172022962)
               

               
               1-704, gnl|Hg17|chr1 (172023141-172022455)
               

               
               1-704, gnl|loxAfr1|scaffold_1013 (152984-153726)
               

               
               1-704, gnl|mm7|chr1 (159887763-159887052)
               

               
               1-704, gnl|Mm7|chr1 (159886893-159887526)
               

               
               1-704, gnl|monDom2|scaffold_16 (26536470-26537197)
               

               
               1-704, gnl|oryCun1|scaffold_206247 (12461-13216)
               

               
               1-704, gnl|panTro1|chr1 (154421636-154422398)
               

               
               1-704, gnl|rheMac2|chr1 (204920668-204921430)
               

               
               1-704, gnl|rn3|chr13 (75360609-75359893)

	1-704, gnl\|bosTau2\|chr16 (44943833-44943120)
	1-704, gnl\|canFam2\|chr7 (27092193-27091388)
	1-704, gnl\|dasNov1\|scaffold_577 (44726-45513)
	1-704, gnl\|echTel1\|scaffold_291942 (44767-45530)
	1-704, gnl\|hg17\|chr1 (172022202-172022962)
	1-704, gnl\|Hg17\|chr1 (172023141-172022455)
	1-704, gnl\|loxAfr1\|scaffold_1013 (152984-153726)
	1-704, gnl\|mm7\|chr1 (159887763-159887052)
	1-704, gnl\|Mm7\|chr1 (159886893-159887526)
	1-704, gnl\|monDom2\|scaffold_16 (26536470-26537197)
	1-704, gnl\|oryCun1\|scaffold_206247 (12461-13216)
	1-704, gnl\|panTro1\|chr1 (154421636-154422398)
	1-704, gnl\|rheMac2\|chr1 (204920668-204921430)
	1-704, gnl\|rn3\|chr13 (75360609-75359893)