Non-Coding RNA Search

Pig3-SRG8015F17

Sequence:


               
               TTTTCAACTTAGTAATCAGCCAAGTCCCAGGGATAGAAAAGTGTAACTTAGCAGAACAAA
TAGGAGACCAATGAATGACATTGTGTCCATGTGCTAGTGGAAACCCAGAGGGTGGCTCTG
CCTTCAGCAGCATCCCCAGACTTGCCAGTGTCTTATTCTAAGGTGGAAGTTCACAATTAT
TACTTCATTGGCAGATGTATTACCTTATCACTCCCGAAATTCAAAATCAGAGTTGCCTCT
GTGTACACATTAACCTGTGTGCTTGAAATCCAGTGTTCTGGTAGGAGTGTAAAACCATCT
ACCCAGTTAATGATCAAGGGACTCCCTCTCATACCTCTCATAGGAGCCCTCATTCTCTGC
TTGAAAGCAAACAAGAAGTGGGGGTGCGGAGGGGTTGTTTTCTTGATACTGAGCCCACAT
CGACTACATTTGGGTAGCTCCCATGTGGTACTGCCCATGTAACATATATTAATCCAAACT
GAAATTTTCCTACATCTATTGCCACAGCCTACATCCAGAAAATGTTCACCTCTCTTCAAG
ACTGTGGTAAATTACTCTCCAGAGTCTCTTTCCTAAGTCTCTCTGTAGCCTTTCTTAAAT
AAGATGTCCAATCTGTCTTCAAATACTGAATGTGATGTGCCCTTCTCCAGCTTCCATGAA
CATTCCCAGTCTACTGATCTTTGGTTGAAACACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCAACTTAGTAATCAGCCAAGTCCCAGGGATAGAAAAGTGTAACTTAGCAGAACAAA
TAGGAGACCAATGAATGACATTGTGTCCATGTGCTAGTGGAAACCCAGAGGGTGGCTCTG
CCTTCAGCAGCATCCCCAGACTTGCCAGTGTCTTATTCTAAGGTGGAAGTTCACAATTAT
TACTTCATTGGCAGATGTATTACCTTATCACTCCCGAAATTCAAAATCAGAGTTGCCTCT
GTGTACACATTAACCTGTGTGCTTGAAATCCAGTGTTCTGGTAGGAGTGTAAAACCATCT
ACCCAGTTAATGATCAAGGGACTCCCTCTCATACCTCTCATAGGAGCCCTCATTCTCTGC
TTGAAAGCAAACAAGAAGTGGGGGTGCGGAGGGGTTGTTTTCTTGATACTGAGCCCACAT
CGACTACATTTGGGTAGCTCCCATGTGGTACTGCCCATGTAACATATATTAATCCAAACT
GAAATTTTCCTACATCTATTGCCACAGCCTACATCCAGAAAATGTTCACCTCTCTTCAAG
ACTGTGGTAAATTACTCTCCAGAGTCTCTTTCCTAAGTCTCTCTGTAGCCTTTCTTAAAT
AAGATGTCCAATCTGTCTTCAAATACTGAATGTGATGTGCCCTTCTCCAGCTTCCATGAA
CATTCCCAGTCTACTGATCTTTGGTTGAAACACCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               182-300, - strand, RNAz p=0.960036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-300, - strand, RNAz p=0.960036

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-175, gnl|bosTau2|chr1 (84978263-84978088)
               

               
               1-175, gnl|canFam2|chr23 (41995705-41995919)
               

               
               1-175, gnl|hg17|chr3 (144591414-144591627)
               

               
               1-175, gnl|Hg17|chr3 (144591636-144591466)
               

               
               1-175, gnl|mm7|chr9 (94760338-94760157)
               

               
               1-175, gnl|Mm7|chr9 (94760146-94760290)
               

               
               1-175, gnl|panTro1|chr2 (147167871-147168084)
               

               
               1-175, gnl|rheMac2|chr2 (144471058-144470849)
               

               
               1-175, gnl|rn3|chr8 (100228458-100228093)
               


               
               182-696, gnl|bosTau2|chr1 (84978034-84977523)
               

               
               182-696, gnl|Mm7|chr9 (94760340-94760777)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr1 (84978263-84978088)
               

               
               1-175, gnl|canFam2|chr23 (41995705-41995919)
               

               
               1-175, gnl|hg17|chr3 (144591414-144591627)
               

               
               1-175, gnl|Hg17|chr3 (144591636-144591466)
               

               
               1-175, gnl|mm7|chr9 (94760338-94760157)
               

               
               1-175, gnl|Mm7|chr9 (94760146-94760290)
               

               
               1-175, gnl|panTro1|chr2 (147167871-147168084)
               

               
               1-175, gnl|rheMac2|chr2 (144471058-144470849)
               

               
               1-175, gnl|rn3|chr8 (100228458-100228093)
               


               
               182-696, gnl|bosTau2|chr1 (84978034-84977523)
               

               
               182-696, gnl|Mm7|chr9 (94760340-94760777)

	1-175, gnl\|bosTau2\|chr1 (84978263-84978088)
	1-175, gnl\|canFam2\|chr23 (41995705-41995919)
	1-175, gnl\|hg17\|chr3 (144591414-144591627)
	1-175, gnl\|Hg17\|chr3 (144591636-144591466)
	1-175, gnl\|mm7\|chr9 (94760338-94760157)
	1-175, gnl\|Mm7\|chr9 (94760146-94760290)
	1-175, gnl\|panTro1\|chr2 (147167871-147168084)
	1-175, gnl\|rheMac2\|chr2 (144471058-144470849)
	1-175, gnl\|rn3\|chr8 (100228458-100228093)

	182-696, gnl\|bosTau2\|chr1 (84978034-84977523)
	182-696, gnl\|Mm7\|chr9 (94760340-94760777)