Non-Coding RNA Search

Pig3-SRG8015O24

Sequence:


               
               GACGATATGGAGAACGAGGACGAGATGTCAGAAGAAGAAGTGGTGGCCTTGAAGCCTTTG
ATGACTTTTTCCCCGAGGAGCCTGTGAGCCTCCCCAAGAAGAAGAAACCCAAGAAGCTCA
AGGAGAGCAGGTCCAAAGGGAAGAGGAAGAAGAAGGAGGGGAGCAATGATGAGCTGTCGG
AAAATGAATAGGATCTGGAAGAGAAGTCAGAGAGCGAGGGTAGTGACTACTCCCCGGAAA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGATATGGAGAACGAGGACGAGATGTCAGAAGAAGAAGTGGTGGCCTTGAAGCCTTTG
ATGACTTTTTCCCCGAGGAGCCTGTGAGCCTCCCCAAGAAGAAGAAACCCAAGAAGCTCA
AGGAGAGCAGGTCCAAAGGGAAGAGGAAGAAGAAGGAGGGGAGCAATGATGAGCTGTCGG
AAAATGAATAGGATCTGGAAGAGAAGTCAGAGAGCGAGGGTAGTGACTACTCCCCGGAAA
AA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               29-165, - strand, RNAz p=0.939663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-165, - strand, RNAz p=0.939663

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               29-165, gnl|bosTau2|chr16 (34971103-34971240)
               

               
               29-165, gnl|canFam2|chr5 (63074236-63074417)
               

               
               29-165, gnl|dasNov1|scaffold_209874 (3372-3209)
               

               
               29-165, gnl|echTel1|scaffold_56104 (170-350)
               

               
               29-165, gnl|fr1|chrUn (272763354-272763188)
               

               
               29-165, gnl|hg17|chr1 (6162442-6162621)
               

               
               29-165, gnl|Hg17|chr1 (6162606-6162466)
               

               
               29-165, gnl|mm7|chr4 (151337624-151337462)
               

               
               29-165, gnl|Mm7|chr4 (151337475-151337612)
               

               
               29-165, gnl|panTro1|chr1 (6092052-6092231)
               

               
               29-165, gnl|rheMac2|chr1 (9170897-9171076)
               

               
               29-165, gnl|rn3|chr5 (169591085-169590926)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-165, gnl|bosTau2|chr16 (34971103-34971240)
               

               
               29-165, gnl|canFam2|chr5 (63074236-63074417)
               

               
               29-165, gnl|dasNov1|scaffold_209874 (3372-3209)
               

               
               29-165, gnl|echTel1|scaffold_56104 (170-350)
               

               
               29-165, gnl|fr1|chrUn (272763354-272763188)
               

               
               29-165, gnl|hg17|chr1 (6162442-6162621)
               

               
               29-165, gnl|Hg17|chr1 (6162606-6162466)
               

               
               29-165, gnl|mm7|chr4 (151337624-151337462)
               

               
               29-165, gnl|Mm7|chr4 (151337475-151337612)
               

               
               29-165, gnl|panTro1|chr1 (6092052-6092231)
               

               
               29-165, gnl|rheMac2|chr1 (9170897-9171076)
               

               
               29-165, gnl|rn3|chr5 (169591085-169590926)

	29-165, gnl\|bosTau2\|chr16 (34971103-34971240)
	29-165, gnl\|canFam2\|chr5 (63074236-63074417)
	29-165, gnl\|dasNov1\|scaffold_209874 (3372-3209)
	29-165, gnl\|echTel1\|scaffold_56104 (170-350)
	29-165, gnl\|fr1\|chrUn (272763354-272763188)
	29-165, gnl\|hg17\|chr1 (6162442-6162621)
	29-165, gnl\|Hg17\|chr1 (6162606-6162466)
	29-165, gnl\|mm7\|chr4 (151337624-151337462)
	29-165, gnl\|Mm7\|chr4 (151337475-151337612)
	29-165, gnl\|panTro1\|chr1 (6092052-6092231)
	29-165, gnl\|rheMac2\|chr1 (9170897-9171076)
	29-165, gnl\|rn3\|chr5 (169591085-169590926)