Non-Coding RNA Search

Pig3-SRG8016B01

Sequence:


               
               TGGCACCGACCGCATCTTCCTCGTGTCTCCCATGACCATCGTGCACGAGATCGACTCTGC
CAGTCCCCTGTATGAACTAGGACGGGCTGAGCTGGCCCGGGCTGACTTTGAGCTGGTGGT
CATCCTCGAGGGCATGGTCGAGGCCACAGCTATGACCACACAGTGTCGTTCGTCCTACGT
GCCTGGTGAGCTGCTTTGGGGCCATCGTTTTGAGCCAGTCCTCTTCCAGCGTGGCTCCCA
GTATGAGGTCGACTATCGCCACTTCCATCGCACTTACGAGGTCCCAGGGACACCTGTCTG
CAGCGCCAAGGAACTGGACGAACGGGCTGAGCGGGCTTCCCACAGCCCCAAGTCAAGCTT
CCCTGGCTCTCTGGCCGCCTTCTGTTATGAGAATGAACTTGCTCTGAGCTGCTGCCAGGA
AGAAGAGGAGGAAGAGGAGGCCACGGAGGGGGATGGGGCAGAGGCAGAAGATGGAGCTGC
CAGCCCCCGAGTACTCACACCAACCTTGGCGCTGACCTTGCCTCCATGATGCAAGCTGGC
ATCCCTCTATTTGTACCCCCTTCCCGGTGGTAGCAAGATGGAGAGATTGGGTCCTCTCCT
GGGATGGGAACAGGTGTTTTCTGAGACCAGCAGGCCTGCTGGGTAAAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCACCGACCGCATCTTCCTCGTGTCTCCCATGACCATCGTGCACGAGATCGACTCTGC
CAGTCCCCTGTATGAACTAGGACGGGCTGAGCTGGCCCGGGCTGACTTTGAGCTGGTGGT
CATCCTCGAGGGCATGGTCGAGGCCACAGCTATGACCACACAGTGTCGTTCGTCCTACGT
GCCTGGTGAGCTGCTTTGGGGCCATCGTTTTGAGCCAGTCCTCTTCCAGCGTGGCTCCCA
GTATGAGGTCGACTATCGCCACTTCCATCGCACTTACGAGGTCCCAGGGACACCTGTCTG
CAGCGCCAAGGAACTGGACGAACGGGCTGAGCGGGCTTCCCACAGCCCCAAGTCAAGCTT
CCCTGGCTCTCTGGCCGCCTTCTGTTATGAGAATGAACTTGCTCTGAGCTGCTGCCAGGA
AGAAGAGGAGGAAGAGGAGGCCACGGAGGGGGATGGGGCAGAGGCAGAAGATGGAGCTGC
CAGCCCCCGAGTACTCACACCAACCTTGGCGCTGACCTTGCCTCCATGATGCAAGCTGGC
ATCCCTCTATTTGTACCCCCTTCCCGGTGGTAGCAAGATGGAGAGATTGGGTCCTCTCCT
GGGATGGGAACAGGTGTTTTCTGAGACCAGCAGGCCTGCTGGGTAAAGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18490767|gb|AAH22700.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18490767|gb|AAH22700.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               534-647, + strand, RNAz p=0.941884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               534-647, + strand, RNAz p=0.941884

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_170720, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_170720, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-647, gnl|bosTau2|chr18 (50355966-50355320)
               

               
               1-647, gnl|Hg17|chr19 (53659318-53659968)
               

               
               1-647, gnl|Mm7|chr7 (41994378-41993735)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-647, gnl|bosTau2|chr18 (50355966-50355320)
               

               
               1-647, gnl|Hg17|chr19 (53659318-53659968)
               

               
               1-647, gnl|Mm7|chr7 (41994378-41993735)

	1-647, gnl\|bosTau2\|chr18 (50355966-50355320)
	1-647, gnl\|Hg17\|chr19 (53659318-53659968)
	1-647, gnl\|Mm7\|chr7 (41994378-41993735)