Non-Coding RNA Search

Pig3-SRG8017D14

Sequence:


               
               CCCCCCGGGGTGGTCCCAGGGCTGTTTTTTTAAAGGGATTTTGGGTAATGAAAGCCTTTT
TCCCCTCAAAGCAGTTTTTAAATTTAATTGGGGGAAACAGGAATGTTTTGGAACCCAAAT
CAAAAAAAGCAGAAATTTCGGTTTGGTTTTGGGCATTAAAACCTGTGCCCCCCCCCCTCC
TTTGATCCCAAGTCAGGTTTCTTTTTTACCCAGGGTATTCAGGAAAACCCTTTAGGACAT
GGGTTAGTTCAAAAAAAAAAGTCCGTCCCCCCCTTGTTATTTGGGGCCACCAGTGAAATC
CTTATGAGGGCCCGGTTTTTTGGTTGTTTTCCTTTACAAACCCCCCCTTTTGGTTTTGGA
TTTAAAATTTGGCCCCCTTTGGAAAAAAAATTGTTCCTTGGGGGATTTGGGACTATTAAA
GGAAAAACTTTGGATTCAAACCTTTTTGCAGGTTTTAAACCCATGGTTTATTTTGTTTTT
TAAAAAAATTTTAGCGGTTTGATCCCAATCCCCTTCCCGTTGGAAAAAAAAACAAAATTT
TGGGCTTTTTTTTTTAAAAATCCCCTTTTTTATaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCGGGGTGGTCCCAGGGCTGTTTTTTTAAAGGGATTTTGGGTAATGAAAGCCTTTT
TCCCCTCAAAGCAGTTTTTAAATTTAATTGGGGGAAACAGGAATGTTTTGGAACCCAAAT
CAAAAAAAGCAGAAATTTCGGTTTGGTTTTGGGCATTAAAACCTGTGCCCCCCCCCCTCC
TTTGATCCCAAGTCAGGTTTCTTTTTTACCCAGGGTATTCAGGAAAACCCTTTAGGACAT
GGGTTAGTTCAAAAAAAAAAGTCCGTCCCCCCCTTGTTATTTGGGGCCACCAGTGAAATC
CTTATGAGGGCCCGGTTTTTTGGTTGTTTTCCTTTACAAACCCCCCCTTTTGGTTTTGGA
TTTAAAATTTGGCCCCCTTTGGAAAAAAAATTGTTCCTTGGGGGATTTGGGACTATTAAA
GGAAAAACTTTGGATTCAAACCTTTTTGCAGGTTTTAAACCCATGGTTTATTTTGTTTTT
TAAAAAAATTTTAGCGGTTTGATCCCAATCCCCTTCCCGTTGGAAAAAAAAACAAAATTT
TGGGCTTTTTTTTTTAAAAATCCCCTTTTTTATaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-432, + strand, RNAz p=0.951297

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-432, + strand, RNAz p=0.951297

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005487, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005487, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-574, gnl|bosTau2|chr5 (43667171-43666601)
               

               
               12-574, gnl|Hg17|chr22 (34015784-34016348)
               

               
               12-574, gnl|Mm7|chr8 (73573370-73573893)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-574, gnl|bosTau2|chr5 (43667171-43666601)
               

               
               12-574, gnl|Hg17|chr22 (34015784-34016348)
               

               
               12-574, gnl|Mm7|chr8 (73573370-73573893)

	12-574, gnl\|bosTau2\|chr5 (43667171-43666601)
	12-574, gnl\|Hg17\|chr22 (34015784-34016348)
	12-574, gnl\|Mm7\|chr8 (73573370-73573893)