Non-Coding RNA Search

Pig3-SRG8019C05

Sequence:


               
               CTGCTGGTGTCCACTCAAGGAGACAATGATAATGTCCAGCGGGAGCTGAGCCACCTGCAG
TCATAGAACGATGCTGCTAGAGATGAGGTGAACGAAGTCCTGCATGCACTGGAAGATCTG
GCCATGAACTACGACCAGATGTCCCAGGAGGTGGAGGAGAAGATCCAACAGAACCAGCTT
CTGGAGGATGAGCTGTCTCAAATGGTGGCCACCATGCTGTCCCTGGAGTCTGAATTGCAT
CGGCTACACGATGGCAGTGGACACCAACCAAAACTAATTGCTGAGGTGCTGAACGGGCTG
ATGAACGACCTGACTGATATCATCGTCATTGTGTGCAACGGGGAGATTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGGTGTCCACTCAAGGAGACAATGATAATGTCCAGCGGGAGCTGAGCCACCTGCAG
TCATAGAACGATGCTGCTAGAGATGAGGTGAACGAAGTCCTGCATGCACTGGAAGATCTG
GCCATGAACTACGACCAGATGTCCCAGGAGGTGGAGGAGAAGATCCAACAGAACCAGCTT
CTGGAGGATGAGCTGTCTCAAATGGTGGCCACCATGCTGTCCCTGGAGTCTGAATTGCAT
CGGCTACACGATGGCAGTGGACACCAACCAAAACTAATTGCTGAGGTGCTGAACGGGCTG
ATGAACGACCTGACTGATATCATCGTCATTGTGTGCAACGGGGAGATTAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-208, - strand, RNAz p=0.987541
               

               
               94-208, + strand, RNAz p=0.824321

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-208, - strand, RNAz p=0.987541
               

               
               94-208, + strand, RNAz p=0.824321

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-208, gnl|bosTau2|chr5 (34730398-34730191)
               

               
               1-208, gnl|canFam2|chr10 (4637452-4637666)
               

               
               1-208, gnl|danRer3|chrUn (40292083-40292295)
               

               
               1-208, gnl|dasNov1|scaffold_5444 (13338-13124)
               

               
               1-208, gnl|echTel1|scaffold_301557 (77450-77661)
               

               
               1-208, gnl|fr1|chrUn (206120570-206120784)
               

               
               1-208, gnl|galGal2|chr7 (35478930-35479143)
               

               
               1-208, gnl|hg17|chr12 (56252110-56252324)
               

               
               1-208, gnl|Hg17|chr12 (56252111-56252318)
               

               
               1-208, gnl|loxAfr1|scaffold_6997 (2377-2163)
               

               
               1-208, gnl|mm7|chr10 (126740831-126740617)
               

               
               1-208, gnl|Mm7|chr10 (126740828-126740621)
               

               
               1-208, gnl|monDom2|scaffold_7 (36393518-36393731)
               

               
               1-208, gnl|oryCun1|scaffold_193948 (11552-11338)
               

               
               1-208, gnl|panTro1|chr10 (57495176-57495390)
               

               
               1-208, gnl|rheMac2|chr11 (54650682-54650896)
               

               
               1-208, gnl|rn3|chr7 (67218447-67218233)
               

               
               1-208, gnl|tetNig1|chr11 (2619107-2618893)
               

               
               1-208, gnl|xenTro1|scaffold_34 (3161482-3161269)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-208, gnl|bosTau2|chr5 (34730398-34730191)
               

               
               1-208, gnl|canFam2|chr10 (4637452-4637666)
               

               
               1-208, gnl|danRer3|chrUn (40292083-40292295)
               

               
               1-208, gnl|dasNov1|scaffold_5444 (13338-13124)
               

               
               1-208, gnl|echTel1|scaffold_301557 (77450-77661)
               

               
               1-208, gnl|fr1|chrUn (206120570-206120784)
               

               
               1-208, gnl|galGal2|chr7 (35478930-35479143)
               

               
               1-208, gnl|hg17|chr12 (56252110-56252324)
               

               
               1-208, gnl|Hg17|chr12 (56252111-56252318)
               

               
               1-208, gnl|loxAfr1|scaffold_6997 (2377-2163)
               

               
               1-208, gnl|mm7|chr10 (126740831-126740617)
               

               
               1-208, gnl|Mm7|chr10 (126740828-126740621)
               

               
               1-208, gnl|monDom2|scaffold_7 (36393518-36393731)
               

               
               1-208, gnl|oryCun1|scaffold_193948 (11552-11338)
               

               
               1-208, gnl|panTro1|chr10 (57495176-57495390)
               

               
               1-208, gnl|rheMac2|chr11 (54650682-54650896)
               

               
               1-208, gnl|rn3|chr7 (67218447-67218233)
               

               
               1-208, gnl|tetNig1|chr11 (2619107-2618893)
               

               
               1-208, gnl|xenTro1|scaffold_34 (3161482-3161269)

	80-208, - strand, RNAz p=0.987541
	94-208, + strand, RNAz p=0.824321

	1-208, gnl\|bosTau2\|chr5 (34730398-34730191)
	1-208, gnl\|canFam2\|chr10 (4637452-4637666)
	1-208, gnl\|danRer3\|chrUn (40292083-40292295)
	1-208, gnl\|dasNov1\|scaffold_5444 (13338-13124)
	1-208, gnl\|echTel1\|scaffold_301557 (77450-77661)
	1-208, gnl\|fr1\|chrUn (206120570-206120784)
	1-208, gnl\|galGal2\|chr7 (35478930-35479143)
	1-208, gnl\|hg17\|chr12 (56252110-56252324)
	1-208, gnl\|Hg17\|chr12 (56252111-56252318)
	1-208, gnl\|loxAfr1\|scaffold_6997 (2377-2163)
	1-208, gnl\|mm7\|chr10 (126740831-126740617)
	1-208, gnl\|Mm7\|chr10 (126740828-126740621)
	1-208, gnl\|monDom2\|scaffold_7 (36393518-36393731)
	1-208, gnl\|oryCun1\|scaffold_193948 (11552-11338)
	1-208, gnl\|panTro1\|chr10 (57495176-57495390)
	1-208, gnl\|rheMac2\|chr11 (54650682-54650896)
	1-208, gnl\|rn3\|chr7 (67218447-67218233)
	1-208, gnl\|tetNig1\|chr11 (2619107-2618893)
	1-208, gnl\|xenTro1\|scaffold_34 (3161482-3161269)