Non-Coding RNA Search

Pig3-SRG8019D23

Sequence:


               
               TCCGGATCCCCCTGAATCCCTACCTGAACCTCCACAGCCTGCTCCCGGCCAGCAACCTGG
CGGGTAAAGAGGCCCGGGGCTGGGGAGGCGCTGGGAGAATCCGCCGCCCATCTGAGGGCC
CCCTGCCTAACCCCCCATCCCCCGGAGGTGGAGGGGGGGGCAGCANCAAAGCCTTTCATC
TCAAGTCCCGCCTGCTCATCCCCCTCACCATCGCCCGCCTGCCCCCTGAGCCATGGCTGC
CCGACAGCTATGGCTTCGACTACCCCTCGGATGTGGGACCCCGGCGGCTCTTCTCCCACC
CACGGGAGCCAACCCTATGGCCTCACGGACCCAGCCGACACAAAATGTCCCCTCCACCCA
TTGGCTTTGGCGAACGGAGTGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGATCCCCCTGAATCCCTACCTGAACCTCCACAGCCTGCTCCCGGCCAGCAACCTGG
CGGGTAAAGAGGCCCGGGGCTGGGGAGGCGCTGGGAGAATCCGCCGCCCATCTGAGGGCC
CCCTGCCTAACCCCCCATCCCCCGGAGGTGGAGGGGGGGGCAGCANCAAAGCCTTTCATC
TCAAGTCCCGCCTGCTCATCCCCCTCACCATCGCCCGCCTGCCCCCTGAGCCATGGCTGC
CCGACAGCTATGGCTTCGACTACCCCTCGGATGTGGGACCCCGGCGGCTCTTCTCCCACC
CACGGGAGCCAACCCTATGGCCTCACGGACCCAGCCGACACAAAATGTCCCCTCCACCCA
TTGGCTTTGGCGAACGGAGTGGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q811K0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q811K0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-153, - strand, RNAz p=0.960992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-153, - strand, RNAz p=0.960992

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-179, - strand, RNAmicro p=0.917391

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-179, - strand, RNAmicro p=0.917391

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-268, gnl|bosTau2|chr7 (9497186-9497459)
               

               
               1-268, gnl|canFam2|chr20 (53797906-53797639)
               

               
               1-268, gnl|hg17|chr19 (10292297-10292551)
               

               
               1-268, gnl|Hg17|chr19 (10292596-10292332)
               

               
               1-268, gnl|loxAfr1|scaffold_21338 (68628-68359)
               

               
               1-268, gnl|mm7|chr9 (20955729-20955996)
               

               
               1-268, gnl|Mm7|chr9 (20956041-20955768)
               

               
               1-268, gnl|monDom2|scaffold_106 (2002237-2002504)
               

               
               1-268, gnl|panTro1|chr20 (10679602-10679856)
               

               
               1-268, gnl|rheMac2|chr19 (10132739-10132993)
               

               
               1-268, gnl|rn3|chr8 (20101398-20101642)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-268, gnl|bosTau2|chr7 (9497186-9497459)
               

               
               1-268, gnl|canFam2|chr20 (53797906-53797639)
               

               
               1-268, gnl|hg17|chr19 (10292297-10292551)
               

               
               1-268, gnl|Hg17|chr19 (10292596-10292332)
               

               
               1-268, gnl|loxAfr1|scaffold_21338 (68628-68359)
               

               
               1-268, gnl|mm7|chr9 (20955729-20955996)
               

               
               1-268, gnl|Mm7|chr9 (20956041-20955768)
               

               
               1-268, gnl|monDom2|scaffold_106 (2002237-2002504)
               

               
               1-268, gnl|panTro1|chr20 (10679602-10679856)
               

               
               1-268, gnl|rheMac2|chr19 (10132739-10132993)
               

               
               1-268, gnl|rn3|chr8 (20101398-20101642)

	1-268, gnl\|bosTau2\|chr7 (9497186-9497459)
	1-268, gnl\|canFam2\|chr20 (53797906-53797639)
	1-268, gnl\|hg17\|chr19 (10292297-10292551)
	1-268, gnl\|Hg17\|chr19 (10292596-10292332)
	1-268, gnl\|loxAfr1\|scaffold_21338 (68628-68359)
	1-268, gnl\|mm7\|chr9 (20955729-20955996)
	1-268, gnl\|Mm7\|chr9 (20956041-20955768)
	1-268, gnl\|monDom2\|scaffold_106 (2002237-2002504)
	1-268, gnl\|panTro1\|chr20 (10679602-10679856)
	1-268, gnl\|rheMac2\|chr19 (10132739-10132993)
	1-268, gnl\|rn3\|chr8 (20101398-20101642)