Non-Coding RNA Search

Pig3-SRG8019F12

Sequence:


               
               GAAACCTTACACATGTCCTTTTAGCCTTCACACAGGACGAGTCAAGGCTGTGTCCACATC
ATCGTGGCTCATACCAAAGACAACAAATACACCCTGAATCATACAAGCGCTGTCTTCGAC
AGCATCCCGGAAGTGGTACACTATTATTCCAACGAGAAGTTGCCCTTCAAGGGGGCAGAA
CACATGACCTTACTCTACCCTGTGCACAGCAAGCTGCACTAAAGTTCAGCCACCAAAAGC
CCCGGCGGGGCCTCTTGCACCTCGGAGGGCATCCGCACCCAACCGGCATCTCAAGAGACA
GGGCTGAACTGCACCACAGTATTTGGGAGGAAGCGGGACTCTTCATTTAGAAGTCCAAAA
ATCTTTGACCTTGAATTCATTCTGTGACACTTGGTTCCTGACCGGTCCCTTTTCTCCTTG
CTCAGTCGTTCCACAATAAGAAACCAGCATGGACCAGTTGCCTCCACTCTCTGGAGTAAG
GTGTTCTGTTTGGGGCATGACCCTCATGAAAGGTAAGTCCAGAGTCCAGAGATAGGAAGG
TTGTCCAAGAATGTGCCAGCTGTTCCCTGGAATGCCTGGCCTCCATACAAACCAACACAA
ATGCACTTGGCTTTGACATAAGACAAAACAATGATCATGTGGGCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACCTTACACATGTCCTTTTAGCCTTCACACAGGACGAGTCAAGGCTGTGTCCACATC
ATCGTGGCTCATACCAAAGACAACAAATACACCCTGAATCATACAAGCGCTGTCTTCGAC
AGCATCCCGGAAGTGGTACACTATTATTCCAACGAGAAGTTGCCCTTCAAGGGGGCAGAA
CACATGACCTTACTCTACCCTGTGCACAGCAAGCTGCACTAAAGTTCAGCCACCAAAAGC
CCCGGCGGGGCCTCTTGCACCTCGGAGGGCATCCGCACCCAACCGGCATCTCAAGAGACA
GGGCTGAACTGCACCACAGTATTTGGGAGGAAGCGGGACTCTTCATTTAGAAGTCCAAAA
ATCTTTGACCTTGAATTCATTCTGTGACACTTGGTTCCTGACCGGTCCCTTTTCTCCTTG
CTCAGTCGTTCCACAATAAGAAACCAGCATGGACCAGTTGCCTCCACTCTCTGGAGTAAG
GTGTTCTGTTTGGGGCATGACCCTCATGAAAGGTAAGTCCAGAGTCCAGAGATAGGAAGG
TTGTCCAAGAATGTGCCAGCTGTTCCCTGGAATGCCTGGCCTCCATACAAACCAACACAA
ATGCACTTGGCTTTGACATAAGACAAAACAATGATCATGTGGGCTCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               33-151, - strand, RNAz p=0.541182

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               33-151, - strand, RNAz p=0.541182

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               33-649, gnl|bosTau2|chr3 (8537678-8537067)
               

               
               33-649, gnl|Hg17|chr1 (151269887-151268978)
               

               
               33-649, gnl|Mm7|chr3 (89981028-89981573)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-649, gnl|bosTau2|chr3 (8537678-8537067)
               

               
               33-649, gnl|Hg17|chr1 (151269887-151268978)
               

               
               33-649, gnl|Mm7|chr3 (89981028-89981573)

	33-649, gnl\|bosTau2\|chr3 (8537678-8537067)
	33-649, gnl\|Hg17\|chr1 (151269887-151268978)
	33-649, gnl\|Mm7\|chr3 (89981028-89981573)