Non-Coding RNA Search

Pig3-SRG8021O05

Sequence:


               
               GCGGCTCGAGCTTTCCACACACCGGCACCTCCCCCCTGCCCCTCCCCGCCCCCCCGTCTC
CCCTTCCCTGTGCTCCTGGGACCGCTTCTTGTGGTGTACTGAGTGTGACTCCAGGGTCGT
CTCATCTGCCTTCTCGCTTCCTGACTGCAGCCAGGGCATGGTAGCCGCACTCCTCTGGGC
ATCCGTGCCTGAAGCTTTGTTTCAAGAACCCCCCCTCCCCCCGTGCGCCCGCTCATGGCA
AGACCAAGAGATGCCTACTTCGGGTACACACATTGAGGGTGGCCTATCCGTACCTGTGAG
AGCAGAGCCCCCAACCTTGACTGTCAGTGTTGCGTTCCTGACTCCTCATCTTCTGAGCTC
AATGAAAATTCCCCTTATCAACACCTTGCTCTTTCTGGCAACGACATAGCCTTGTTCTTC
GAATTCCCAGGAGACCAGTGCAGCCTGGATGCAGTTGCCTCCTGTCGGCTTTCCTGCACT
TTGAGTTTCCTTCTCCAGGCTCTGGCCCGCCTCGGCTTCCTTACCCTGCTCTCCGCTTCC
CCCCGCCCCCCTCGGCTCTGACTGGTGCCCTGTTGCTACTCCTGGGCCTGATCTGCATCC
TGCCGNAGCTTCCCTGGCTCTGGCCCTTCCCACCCCGCCCTTGCTTCCTAACTAGAGCCT
CCTGCCCGCACCCACCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCTTTCCACACACCGGCACCTCCCCCCTGCCCCTCCCCGCCCCCCCGTCTC
CCCTTCCCTGTGCTCCTGGGACCGCTTCTTGTGGTGTACTGAGTGTGACTCCAGGGTCGT
CTCATCTGCCTTCTCGCTTCCTGACTGCAGCCAGGGCATGGTAGCCGCACTCCTCTGGGC
ATCCGTGCCTGAAGCTTTGTTTCAAGAACCCCCCCTCCCCCCGTGCGCCCGCTCATGGCA
AGACCAAGAGATGCCTACTTCGGGTACACACATTGAGGGTGGCCTATCCGTACCTGTGAG
AGCAGAGCCCCCAACCTTGACTGTCAGTGTTGCGTTCCTGACTCCTCATCTTCTGAGCTC
AATGAAAATTCCCCTTATCAACACCTTGCTCTTTCTGGCAACGACATAGCCTTGTTCTTC
GAATTCCCAGGAGACCAGTGCAGCCTGGATGCAGTTGCCTCCTGTCGGCTTTCCTGCACT
TTGAGTTTCCTTCTCCAGGCTCTGGCCCGCCTCGGCTTCCTTACCCTGCTCTCCGCTTCC
CCCCGCCCCCCTCGGCTCTGACTGGTGCCCTGTTGCTACTCCTGGGCCTGATCTGCATCC
TGCCGNAGCTTCCCTGGCTCTGGCCCTTCCCACCCCGCCCTTGCTTCCTAACTAGAGCCT
CCTGCCCGCACCCACCCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-515, - strand, RNAz p=0.617124

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-515, - strand, RNAz p=0.617124

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-189, gnl|bosTau2|chr29 (30620801-30620950)
               

               
               40-189, gnl|Hg17|chr11 (63427358-63427522)
               

               
               40-189, gnl|Mm7|chr19 (7102441-7102293)
               


               
               218-680, gnl|bosTau2|chr29 (30620949-30621414)
               

               
               218-680, gnl|Hg17|chr11 (63427521-63428001)
               

               
               218-680, gnl|Mm7|chr19 (7102294-7101852)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-189, gnl|bosTau2|chr29 (30620801-30620950)
               

               
               40-189, gnl|Hg17|chr11 (63427358-63427522)
               

               
               40-189, gnl|Mm7|chr19 (7102441-7102293)
               


               
               218-680, gnl|bosTau2|chr29 (30620949-30621414)
               

               
               218-680, gnl|Hg17|chr11 (63427521-63428001)
               

               
               218-680, gnl|Mm7|chr19 (7102294-7101852)

	40-189, gnl\|bosTau2\|chr29 (30620801-30620950)
	40-189, gnl\|Hg17\|chr11 (63427358-63427522)
	40-189, gnl\|Mm7\|chr19 (7102441-7102293)

	218-680, gnl\|bosTau2\|chr29 (30620949-30621414)
	218-680, gnl\|Hg17\|chr11 (63427521-63428001)
	218-680, gnl\|Mm7\|chr19 (7102294-7101852)