Non-Coding RNA Search

Pig3-SRG8021O16

Sequence:


               
               GGGAGAGGTGGGTGGAGGCGCATCTCGGTCGACCTCAGTGGCCTTTCGCATCACAGGTGA
ATGATTTATCGTCCCTGTCACTTCTGAGTGAGGTGAATCATTTCCTGGGCAACAAACTGT
TATTCGGGTGTAACGTCACCCCGATATGTGCAGGGAGACTTTGTTACCAAAGGTTTTTGT
GTATGAAATTCTGGCTTCTTAAGTGATCCCGGCTTCGAAGGGCCTGGGAGAGCATACGAT
GCTGTGAGGGCGCATTGAATGATCCCGCATACCTTCTGTTCACACGTGTGGCACTCGTTC
CCATGACGGGCCCACTGACAACAAGGAGACACCGCGGCAGGAGGGACCCGATCCTGAGCT
TTATCCTAACTGCAGGCCGATACCCACATCTGTGATGGGCAGCCAGGGGTGGCTTCGACA
CTCAAATGACAACAAGAGCTCATTCTGCATCCCTCTCAAGACAAACTAATTCAACCTTTT
ATTTGCACGGGATGGGGGATACATCAGCTCTTTGGTTCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAGGTGGGTGGAGGCGCATCTCGGTCGACCTCAGTGGCCTTTCGCATCACAGGTGA
ATGATTTATCGTCCCTGTCACTTCTGAGTGAGGTGAATCATTTCCTGGGCAACAAACTGT
TATTCGGGTGTAACGTCACCCCGATATGTGCAGGGAGACTTTGTTACCAAAGGTTTTTGT
GTATGAAATTCTGGCTTCTTAAGTGATCCCGGCTTCGAAGGGCCTGGGAGAGCATACGAT
GCTGTGAGGGCGCATTGAATGATCCCGCATACCTTCTGTTCACACGTGTGGCACTCGTTC
CCATGACGGGCCCACTGACAACAAGGAGACACCGCGGCAGGAGGGACCCGATCCTGAGCT
TTATCCTAACTGCAGGCCGATACCCACATCTGTGATGGGCAGCCAGGGGTGGCTTCGACA
CTCAAATGACAACAAGAGCTCATTCTGCATCCCTCTCAAGACAAACTAATTCAACCTTTT
ATTTGCACGGGATGGGGGATACATCAGCTCTTTGGTTCTTGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               60-155, - strand, RNAz p=0.565974
               

               
               277-396, - strand, RNAz p=0.748957

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               60-155, - strand, RNAz p=0.565974
               

               
               277-396, - strand, RNAz p=0.748957

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-112, + strand, RNAmicro p=0.906591

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-112, + strand, RNAmicro p=0.906591

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-522, gnl|bosTau2|chr13 (36837653-36837126)
               

               
               2-522, gnl|canFam2|chr24 (48613347-48613916)
               

               
               2-522, gnl|dasNov1|scaffold_4 (179367-179912)
               

               
               2-522, gnl|galGal2|chr20 (6967780-6968355)
               

               
               2-522, gnl|hg17|chr20 (59263465-59264026)
               

               
               2-522, gnl|Hg17|chr20 (59263505-59264027)
               

               
               2-522, gnl|loxAfr1|scaffold_69766 (9668-9121)
               

               
               2-522, gnl|mm7|chr2 (179945768-179946294)
               

               
               2-522, gnl|monDom2|scaffold_1 (177901898-177902461)
               

               
               2-522, gnl|oryCun1|scaffold_77082 (690-1175)
               

               
               2-522, gnl|panTro1|chr21 (62255888-62256449)
               

               
               2-522, gnl|rheMac2|chr10 (3275765-3275214)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-522, gnl|bosTau2|chr13 (36837653-36837126)
               

               
               2-522, gnl|canFam2|chr24 (48613347-48613916)
               

               
               2-522, gnl|dasNov1|scaffold_4 (179367-179912)
               

               
               2-522, gnl|galGal2|chr20 (6967780-6968355)
               

               
               2-522, gnl|hg17|chr20 (59263465-59264026)
               

               
               2-522, gnl|Hg17|chr20 (59263505-59264027)
               

               
               2-522, gnl|loxAfr1|scaffold_69766 (9668-9121)
               

               
               2-522, gnl|mm7|chr2 (179945768-179946294)
               

               
               2-522, gnl|monDom2|scaffold_1 (177901898-177902461)
               

               
               2-522, gnl|oryCun1|scaffold_77082 (690-1175)
               

               
               2-522, gnl|panTro1|chr21 (62255888-62256449)
               

               
               2-522, gnl|rheMac2|chr10 (3275765-3275214)

	60-155, - strand, RNAz p=0.565974
	277-396, - strand, RNAz p=0.748957

	2-522, gnl\|bosTau2\|chr13 (36837653-36837126)
	2-522, gnl\|canFam2\|chr24 (48613347-48613916)
	2-522, gnl\|dasNov1\|scaffold_4 (179367-179912)
	2-522, gnl\|galGal2\|chr20 (6967780-6968355)
	2-522, gnl\|hg17\|chr20 (59263465-59264026)
	2-522, gnl\|Hg17\|chr20 (59263505-59264027)
	2-522, gnl\|loxAfr1\|scaffold_69766 (9668-9121)
	2-522, gnl\|mm7\|chr2 (179945768-179946294)
	2-522, gnl\|monDom2\|scaffold_1 (177901898-177902461)
	2-522, gnl\|oryCun1\|scaffold_77082 (690-1175)
	2-522, gnl\|panTro1\|chr21 (62255888-62256449)
	2-522, gnl\|rheMac2\|chr10 (3275765-3275214)