Non-Coding RNA Search

Pig3-SRG8022B04

Sequence:


               
               AAGGTGTGCTGAGCGGCCTTCCGGTGGGCTGGCTGTGCGGTGGCATGTGACTTCACTGAG
TAGGTGTCTTTGTATGTCTGAAATCCAGCGAGTGTGTGGGACTGCCCGTGTCAGTTACAT
GTGTGCATGTGGAGACGTAGCTGTTCTGGAGCCATGTTGCTGCTTTGTGAGTGCCGAGTG
GCTCCACTGTGCTCTAGTGCTGTCTCAAGAGTGTGTGCCAGCACGCCCAAACACCCGGCC
ATGTGTCTCTGGATTGCTTCAGCGCCCCTCGGTAGCGGTGTGTGTGAATCGGTGTCAGCC
TGTGTCAGTGTGTGTGCCTGTGTTGGGTAAATGAGGCCAGAGAGCTGCTTAGCACAAGGC
CCAGGTCACATACCCTCCTGGAAAAGGGATCATGGAAGGACAGTGACCAGAAGGACAGGA
CAGGACTGGACAGGGGAGGAGAGGGCCTGGCCCCTTGGACTTTGGCCTATGATAGTCTCC
CTCCCTCCCTGGCACTTACTCTCCCTCCCTCTCCATCTGTATGGGTGGGAAACTCAGGCC
AGGGCCGCACAGACCTGGTACTGGGGCCACCAGAGAGAAGCTGACAACCCCTTGGCTCTC
CAGGCCCAGGATGAAGGGGAAAGCCCACCAGGGAGTAGAAATGCCAGACTGGCCATGTGG
AAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTGTGCTGAGCGGCCTTCCGGTGGGCTGGCTGTGCGGTGGCATGTGACTTCACTGAG
TAGGTGTCTTTGTATGTCTGAAATCCAGCGAGTGTGTGGGACTGCCCGTGTCAGTTACAT
GTGTGCATGTGGAGACGTAGCTGTTCTGGAGCCATGTTGCTGCTTTGTGAGTGCCGAGTG
GCTCCACTGTGCTCTAGTGCTGTCTCAAGAGTGTGTGCCAGCACGCCCAAACACCCGGCC
ATGTGTCTCTGGATTGCTTCAGCGCCCCTCGGTAGCGGTGTGTGTGAATCGGTGTCAGCC
TGTGTCAGTGTGTGTGCCTGTGTTGGGTAAATGAGGCCAGAGAGCTGCTTAGCACAAGGC
CCAGGTCACATACCCTCCTGGAAAAGGGATCATGGAAGGACAGTGACCAGAAGGACAGGA
CAGGACTGGACAGGGGAGGAGAGGGCCTGGCCCCTTGGACTTTGGCCTATGATAGTCTCC
CTCCCTCCCTGGCACTTACTCTCCCTCCCTCTCCATCTGTATGGGTGGGAAACTCAGGCC
AGGGCCGCACAGACCTGGTACTGGGGCCACCAGAGAGAAGCTGACAACCCCTTGGCTCTC
CAGGCCCAGGATGAAGGGGAAAGCCCACCAGGGAGTAGAAATGCCAGACTGGCCATGTGG
AAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               523-640, - strand, RNAz p=0.573998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               523-640, - strand, RNAz p=0.573998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-660, gnl|bosTau2|chr5 (60465151-60464531)
               

               
               30-660, gnl|Hg17|chr12 (6747163-6747777)
               

               
               30-660, gnl|Mm7|chr6 (124943000-124942430)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-660, gnl|bosTau2|chr5 (60465151-60464531)
               

               
               30-660, gnl|Hg17|chr12 (6747163-6747777)
               

               
               30-660, gnl|Mm7|chr6 (124943000-124942430)

	30-660, gnl\|bosTau2\|chr5 (60465151-60464531)
	30-660, gnl\|Hg17\|chr12 (6747163-6747777)
	30-660, gnl\|Mm7\|chr6 (124943000-124942430)