Non-Coding RNA Search

Pig3-SRG8023M08

Sequence:


               
               AGGAAGTGAGCAGTTTGCTGAGACACCCAAGGAGAACCATAGCAACTACCGGACCTTGNT
AGAAAAAGAAAAGGAGTGGGCCCTGGCAGTGTCCAGTTCTCAGCTCAATACCATAGTGAC
CATGAATCATNAATCACCCNTCACCCTCACCACCCAGCAGTTGGGGTTTCAGGGGTAGTT
GCGGGAACTGGGGGAGACTTGGCTGGGTTCCGCCACCATGAGAAGAATGGTGGGGTGGTG
CTGTTTCCTCCTGGGGGAGGCTGTGGTGGTAGCAGTATGCTACTAGACCGAGAGAGGCCA
CAACCAGCCCCCTGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGCCGAAATTA
AAGGAACTGCATGTCCACCCTCCTGGCATGCAATACCCAGACTTACAGCAGGATGCCAGG
CTTAAAGAAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCAAAAA
AGTGATTACCTCGAGTTAAGGGCCAAACTTCAAACCAAGCCGGATTACCTCGAAGTCCTG
GAGAAGACAACAATAGGTTCTAACAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAGTGAGCAGTTTGCTGAGACACCCAAGGAGAACCATAGCAACTACCGGACCTTGNT
AGAAAAAGAAAAGGAGTGGGCCCTGGCAGTGTCCAGTTCTCAGCTCAATACCATAGTGAC
CATGAATCATNAATCACCCNTCACCCTCACCACCCAGCAGTTGGGGTTTCAGGGGTAGTT
GCGGGAACTGGGGGAGACTTGGCTGGGTTCCGCCACCATGAGAAGAATGGTGGGGTGGTG
CTGTTTCCTCCTGGGGGAGGCTGTGGTGGTAGCAGTATGCTACTAGACCGAGAGAGGCCA
CAACCAGCCCCCTGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGCCGAAATTA
AAGGAACTGCATGTCCACCCTCCTGGCATGCAATACCCAGACTTACAGCAGGATGCCAGG
CTTAAAGAAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCAAAAA
AGTGATTACCTCGAGTTAAGGGCCAAACTTCAAACCAAGCCGGATTACCTCGAAGTCCTG
GAGAAGACAACAATAGGTTCTAACAGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-357, + strand, RNAz p=0.997019

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-357, + strand, RNAz p=0.997019

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               144-353, BY590670 RIKEN full-length enriched, adult inner ear Mus musculus 
(dbj|BY590670.1|), blast E-value=0, identity=91.98% 
               

               
               214-353, BY637758 RIKEN full-length enriched, visual cortex Mus musculus 
(dbj|BY637758.1|), blast E-value=4e-37, identity=90.07% 
               

               
               187-353, BY639030 RIKEN full-length enriched, visual cortex Mus musculus 
(dbj|BY639030.1|), blast E-value=0, identity=94.61% 
               

               
               175-353, BX411220 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX411220.2|), blast E-value=0, identity=94.97% 
               

               
               194-353, UI-R-A0-ap-a-06-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone 
(gb|AA819827.1|), blast E-value=0, identity=93.12% 
               

               
               121-353, 1392588 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN543714.1|), 
blast E-value=0, identity=92.37%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               144-353, BY590670 RIKEN full-length enriched, adult inner ear Mus musculus 
(dbj|BY590670.1|), blast E-value=0, identity=91.98% 
               

               
               214-353, BY637758 RIKEN full-length enriched, visual cortex Mus musculus 
(dbj|BY637758.1|), blast E-value=4e-37, identity=90.07% 
               

               
               187-353, BY639030 RIKEN full-length enriched, visual cortex Mus musculus 
(dbj|BY639030.1|), blast E-value=0, identity=94.61% 
               

               
               175-353, BX411220 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX411220.2|), blast E-value=0, identity=94.97% 
               

               
               194-353, UI-R-A0-ap-a-06-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone 
(gb|AA819827.1|), blast E-value=0, identity=93.12% 
               

               
               121-353, 1392588 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN543714.1|), 
blast E-value=0, identity=92.37%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-571, gnl|bosTau2|chr1 (68290357-68289785)
               

               
               1-571, gnl|Hg17|chr3 (166388945-166388379)
               

               
               1-571, gnl|Mm7|chr3 (73148710-73148138)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-571, gnl|bosTau2|chr1 (68290357-68289785)
               

               
               1-571, gnl|Hg17|chr3 (166388945-166388379)
               

               
               1-571, gnl|Mm7|chr3 (73148710-73148138)

	144-353, BY590670 RIKEN full-length enriched, adult inner ear Mus musculus (dbj\|BY590670.1\|), blast E-value=0, identity=91.98%
	214-353, BY637758 RIKEN full-length enriched, visual cortex Mus musculus (dbj\|BY637758.1\|), blast E-value=4e-37, identity=90.07%
	187-353, BY639030 RIKEN full-length enriched, visual cortex Mus musculus (dbj\|BY639030.1\|), blast E-value=0, identity=94.61%
	175-353, BX411220 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX411220.2\|), blast E-value=0, identity=94.97%
	194-353, UI-R-A0-ap-a-06-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone (gb\|AA819827.1\|), blast E-value=0, identity=93.12%
	121-353, 1392588 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN543714.1\|), blast E-value=0, identity=92.37%

	1-571, gnl\|bosTau2\|chr1 (68290357-68289785)
	1-571, gnl\|Hg17\|chr3 (166388945-166388379)
	1-571, gnl\|Mm7\|chr3 (73148710-73148138)