Non-Coding RNA Search

Pig3-SRG8023P03

Sequence:


               
               AGAAACCAGAACAACAGAAAGCAGTTTTTGAGATGTGCCCATCTCCAGCGCAAAACAGTC
ACATCCAGGGAACCATAAAGNTAGTATNTGGTGAAGAATTCTGTTCAGGTTCTGGCAGCA
ATGTGCAGGCTCCCGGTGGCAGCTTTGAGCGGTATTTAAAGCAAAATGAAATGAATGGTG
CTTACTTCAAGCAAAGCTCAGTGTTCANTAAGGATTCCTTTTNTGCCACTACCACACCAC
CACCATCACAGTTGCTTCTTTCTCCCCCTCCTCCTCTTCCACAGGTTCCTCAGCTTCCTT
CAGAAGGAAAAAGCACCCTGAGTGATGGAGGTTTGGAAGGACACCATCACTACCCCAACC
AAAGTAACACAGTTCTTTTAAAGGAAATGAAAATAGAGAGTCAGCTTGAGGCACCACCAT
CCCAGACTCTTAATCCATCTACACATGTATCCAACCCCCCTCTGATGCTTCCAGAAAAGC
CGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAACCAGAACAACAGAAAGCAGTTTTTGAGATGTGCCCATCTCCAGCGCAAAACAGTC
ACATCCAGGGAACCATAAAGNTAGTATNTGGTGAAGAATTCTGTTCAGGTTCTGGCAGCA
ATGTGCAGGCTCCCGGTGGCAGCTTTGAGCGGTATTTAAAGCAAAATGAAATGAATGGTG
CTTACTTCAAGCAAAGCTCAGTGTTCANTAAGGATTCCTTTTNTGCCACTACCACACCAC
CACCATCACAGTTGCTTCTTTCTCCCCCTCCTCCTCTTCCACAGGTTCCTCAGCTTCCTT
CAGAAGGAAAAAGCACCCTGAGTGATGGAGGTTTGGAAGGACACCATCACTACCCCAACC
AAAGTAACACAGTTCTTTTAAAGGAAATGAAAATAGAGAGTCAGCTTGAGGCACCACCAT
CCCAGACTCTTAATCCATCTACACATGTATCCAACCCCCCTCTGATGCTTCCAGAAAAGC
CGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-347, - strand, RNAz p=0.600757

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-347, - strand, RNAz p=0.600757

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-487, gnl|bosTau2|chr6 (6106161-6106647)
               

               
               1-487, gnl|Hg17|chr4 (106513653-106514148)
               

               
               1-487, gnl|Mm7|chr3 (133284696-133284222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-487, gnl|bosTau2|chr6 (6106161-6106647)
               

               
               1-487, gnl|Hg17|chr4 (106513653-106514148)
               

               
               1-487, gnl|Mm7|chr3 (133284696-133284222)

	1-487, gnl\|bosTau2\|chr6 (6106161-6106647)
	1-487, gnl\|Hg17\|chr4 (106513653-106514148)
	1-487, gnl\|Mm7\|chr3 (133284696-133284222)