Non-Coding RNA Search

Pig3-SRG8024A03

Sequence:


               
               AGACGATGTGACTGCATGAAGTGAGTATGCTTTTTTGAACTGTTTACAATAACTGGGGCA
TTAACTTACTGATAATTCCATTTAAGTAAAAGAGGGCTTTGTTGAAGTCTAGCTGTCTTG
AGTATATTTGGATCTTGACGAATGGTGACTTAAGTAACTCCCCATACCTCAAGATGTAAA
TATACTTTTTAATCTGTAAGTTAAAGCCTAATTAATTATATAAAAAAGGAAAAACTAGGG
GAAAAATTAAAAAGCATACTCGCTACAATAAGCATAGAGGACCACATTTTTAAAACATTC
TCTAAATTGAGTCCTAAACTATGAGAAGGCAAATTTGGGGTCATGCAGATTCTGTGGGTT
TATGGCATTTCTGCAAATACATCCAAAACAAATGTAAACCCATAAACTGATACCAAAATA
AGAGTGTCCAAAAATAATCAAATTATAGAGTGGATTGCCCTAATAAAAGTGTTTTTCCTA
CAAAGGGCTACTTGTGGAAATTTTCTCATCTTAAGGAGGATGATAGGTTAACTCATTTAT
TAGCCTTGTCTTAATTCTTATTTCAGATATAAAGTACACTTTGGTCATTATTTCTGGAAC
ATTTCTGGCTTTCTAAGACTTGTGTTCTATGATAACATACACTGCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGATGTGACTGCATGAAGTGAGTATGCTTTTTTGAACTGTTTACAATAACTGGGGCA
TTAACTTACTGATAATTCCATTTAAGTAAAAGAGGGCTTTGTTGAAGTCTAGCTGTCTTG
AGTATATTTGGATCTTGACGAATGGTGACTTAAGTAACTCCCCATACCTCAAGATGTAAA
TATACTTTTTAATCTGTAAGTTAAAGCCTAATTAATTATATAAAAAAGGAAAAACTAGGG
GAAAAATTAAAAAGCATACTCGCTACAATAAGCATAGAGGACCACATTTTTAAAACATTC
TCTAAATTGAGTCCTAAACTATGAGAAGGCAAATTTGGGGTCATGCAGATTCTGTGGGTT
TATGGCATTTCTGCAAATACATCCAAAACAAATGTAAACCCATAAACTGATACCAAAATA
AGAGTGTCCAAAAATAATCAAATTATAGAGTGGATTGCCCTAATAAAAGTGTTTTTCCTA
CAAAGGGCTACTTGTGGAAATTTTCTCATCTTAAGGAGGATGATAGGTTAACTCATTTAT
TAGCCTTGTCTTAATTCTTATTTCAGATATAAAGTACACTTTGGTCATTATTTCTGGAAC
ATTTCTGGCTTTCTAAGACTTGTGTTCTATGATAACATACACTGCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-278, + strand, RNAz p=0.984224

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-278, + strand, RNAz p=0.984224

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               121-184, + strand, RNAmicro p=0.998949

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               121-184, + strand, RNAmicro p=0.998949

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-649, gnl|bosTau2|chr21 (35417939-35417275)
               

               
               1-649, gnl|Hg17|chr14 (91002377-91001708)
               

               
               1-649, gnl|Mm7|chr12 (98540897-98540239)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-649, gnl|bosTau2|chr21 (35417939-35417275)
               

               
               1-649, gnl|Hg17|chr14 (91002377-91001708)
               

               
               1-649, gnl|Mm7|chr12 (98540897-98540239)

	1-649, gnl\|bosTau2\|chr21 (35417939-35417275)
	1-649, gnl\|Hg17\|chr14 (91002377-91001708)
	1-649, gnl\|Mm7\|chr12 (98540897-98540239)