Non-Coding RNA Search

Pig3-SRG8024H05

Sequence:


               
               GGGTGGGGGAGGGGGGAAAAGAAGGAAGGAAAAGTTCACCATCTGATAGCTTATCATAAC
AGAATCCAAATGTCACATTCATTGGGAAAGTTGGGAGATTAAATTTTCCAGCGCCCTTCT
CTGCTGCTGACATTTCGGGGGCTTTCTTCTCCCGAGCCTCCCCCTCCTCCCATCAGAACG
TGAGGGGCTCACGCCTCATAGGCGGTCCCCACCCACCCCCACCCCCACTCTGGCCTCCAT
GCTCAACAGCTGCCTGGCCGGCTTTGCCAGGCCTCCAGGAGCTTCTGAGTGTCTTCCTGG
GGTGTGCCGAGGTATGCAGAGGGGTGACACGCTGGATGATGGGCAATGGAAGGGCAGCAG
ATGGCTTGGATTTTGCTGTACAAAATCCACTGTTAAAAAGATGAAAAGGGTGTTTGCTGC
ATGCCCTTCCGAGCCGCACATAGGCCATCCTGCTACAGCCCTCATCCAGGCAGTAATTCA
TTCCCCATGCCTGAAGGTGCACCCAGAGAGAGCACTCCCATGATGGGGAGGGCACATCTG
GCTGGGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGGGGGAGGGGGGAAAAGAAGGAAGGAAAAGTTCACCATCTGATAGCTTATCATAAC
AGAATCCAAATGTCACATTCATTGGGAAAGTTGGGAGATTAAATTTTCCAGCGCCCTTCT
CTGCTGCTGACATTTCGGGGGCTTTCTTCTCCCGAGCCTCCCCCTCCTCCCATCAGAACG
TGAGGGGCTCACGCCTCATAGGCGGTCCCCACCCACCCCCACCCCCACTCTGGCCTCCAT
GCTCAACAGCTGCCTGGCCGGCTTTGCCAGGCCTCCAGGAGCTTCTGAGTGTCTTCCTGG
GGTGTGCCGAGGTATGCAGAGGGGTGACACGCTGGATGATGGGCAATGGAAGGGCAGCAG
ATGGCTTGGATTTTGCTGTACAAAATCCACTGTTAAAAAGATGAAAAGGGTGTTTGCTGC
ATGCCCTTCCGAGCCGCACATAGGCCATCCTGCTACAGCCCTCATCCAGGCAGTAATTCA
TTCCCCATGCCTGAAGGTGCACCCAGAGAGAGCACTCCCATGATGGGGAGGGCACATCTG
GCTGGGTGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               90-198, + strand, RNAz p=0.540195
               

               
               321-418, - strand, RNAz p=0.805457

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-198, + strand, RNAz p=0.540195
               

               
               321-418, - strand, RNAz p=0.805457

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               2-198, gnl|bosTau2|chr22 (38658841-38658644)
               

               
               2-198, gnl|Hg17|chr3 (50398416-50398218)
               

               
               2-198, gnl|Mm7|chr9 (107237157-107237358)
               


               
               281-435, gnl|bosTau2|chr22 (38658598-38658442)
               

               
               281-435, gnl|canFam2|chr20 (41972498-41972295)
               

               
               281-435, gnl|dasNov1|scaffold_117533 (5782-5565)
               

               
               281-435, gnl|echTel1|scaffold_215499 (354-136)
               

               
               281-435, gnl|hg17|chr3 (50398020-50398222)
               

               
               281-435, gnl|Hg17|chr3 (50398167-50398009)
               

               
               281-435, gnl|loxAfr1|scaffold_86080 (8873-9090)
               

               
               281-435, gnl|mm7|chr9 (107237548-107237346)
               

               
               281-435, gnl|Mm7|chr9 (107237401-107237539)
               

               
               281-435, gnl|monDom2|scaffold_5 (73854395-73854180)
               

               
               281-435, gnl|panTro1|chr2 (51977738-51977940)
               

               
               281-435, gnl|rheMac2|chr2 (86028821-86028621)
               

               
               281-435, gnl|rn3|chr8 (112775155-112774957)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-198, gnl|bosTau2|chr22 (38658841-38658644)
               

               
               2-198, gnl|Hg17|chr3 (50398416-50398218)
               

               
               2-198, gnl|Mm7|chr9 (107237157-107237358)
               


               
               281-435, gnl|bosTau2|chr22 (38658598-38658442)
               

               
               281-435, gnl|canFam2|chr20 (41972498-41972295)
               

               
               281-435, gnl|dasNov1|scaffold_117533 (5782-5565)
               

               
               281-435, gnl|echTel1|scaffold_215499 (354-136)
               

               
               281-435, gnl|hg17|chr3 (50398020-50398222)
               

               
               281-435, gnl|Hg17|chr3 (50398167-50398009)
               

               
               281-435, gnl|loxAfr1|scaffold_86080 (8873-9090)
               

               
               281-435, gnl|mm7|chr9 (107237548-107237346)
               

               
               281-435, gnl|Mm7|chr9 (107237401-107237539)
               

               
               281-435, gnl|monDom2|scaffold_5 (73854395-73854180)
               

               
               281-435, gnl|panTro1|chr2 (51977738-51977940)
               

               
               281-435, gnl|rheMac2|chr2 (86028821-86028621)
               

               
               281-435, gnl|rn3|chr8 (112775155-112774957)

	90-198, + strand, RNAz p=0.540195
	321-418, - strand, RNAz p=0.805457

	2-198, gnl\|bosTau2\|chr22 (38658841-38658644)
	2-198, gnl\|Hg17\|chr3 (50398416-50398218)
	2-198, gnl\|Mm7\|chr9 (107237157-107237358)

	281-435, gnl\|bosTau2\|chr22 (38658598-38658442)
	281-435, gnl\|canFam2\|chr20 (41972498-41972295)
	281-435, gnl\|dasNov1\|scaffold_117533 (5782-5565)
	281-435, gnl\|echTel1\|scaffold_215499 (354-136)
	281-435, gnl\|hg17\|chr3 (50398020-50398222)
	281-435, gnl\|Hg17\|chr3 (50398167-50398009)
	281-435, gnl\|loxAfr1\|scaffold_86080 (8873-9090)
	281-435, gnl\|mm7\|chr9 (107237548-107237346)
	281-435, gnl\|Mm7\|chr9 (107237401-107237539)
	281-435, gnl\|monDom2\|scaffold_5 (73854395-73854180)
	281-435, gnl\|panTro1\|chr2 (51977738-51977940)
	281-435, gnl\|rheMac2\|chr2 (86028821-86028621)
	281-435, gnl\|rn3\|chr8 (112775155-112774957)