Pig3-SRG8025M21
|
GCTGGACAGGCTGGCCAAGGAGAACCAGGACATCGGGCTGCTGCAGGCCCAGCTGCAGGC
CCAGAAGGAAGAACTTCAGAGCCTGATGCATCAGCCCAAAGGGCTAGAAGAGGAGAATGC
CCGGCTCCGAGGGGCCCTAGAGCAGGGCGAGGCCTCCCAGCGGGCCCTGGAGTCGGAGCT
GCAGCAGCTGAGAGCCCAGCTCCAGGGGCTGGAGGCCGACTGCGTCCCGGGCACAGATGG
GGTGTGCCTCCACTGGGGCAGAGGCCCTCAGGCTGGCAAGGTCACCAAGGAGCAAGGCCC
TAGGGGGCAGGAGCAAGGCCCTAGGGGGCAGGAGCCACGCCCTGGCTTCCTGGAGCAGAA
GGAACAGCCAGAGGCTGAGGCTCAGGCGTTAAGGCAAGAGTTGGAGAGGCAGCAGCGGGT
GCTGGGGTCTGTGCAGCAGGACCTGGAGCGGAGCTTGAGGGATGCGGGCCTGGCTGAGCT
GGGCCACAGACTGGTCCAGAAGCTGCAAGGCCTGGAGAACTGGGGCCAGCTCTCTGGGGT
CCCTGCTAATGTCTCAGAGGCCTGGCGTCAGGAACCTCACTTCCACAGTTCCAGAGAGCG
GAGTGGAAAGGAAAAGTGGTGGGATGGGCAGAGGGACCGGAAGACGGAGCGCTGGAAACA
CAAGAAGGAGCAATCTGGCTGGAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGGACAGGCTGGCCAAGGAGAACCAGGACATCGGGCTGCTGCAGGCCCAGCTGCAGGC
CCAGAAGGAAGAACTTCAGAGCCTGATGCATCAGCCCAAAGGGCTAGAAGAGGAGAATGC
CCGGCTCCGAGGGGCCCTAGAGCAGGGCGAGGCCTCCCAGCGGGCCCTGGAGTCGGAGCT
GCAGCAGCTGAGAGCCCAGCTCCAGGGGCTGGAGGCCGACTGCGTCCCGGGCACAGATGG
GGTGTGCCTCCACTGGGGCAGAGGCCCTCAGGCTGGCAAGGTCACCAAGGAGCAAGGCCC
TAGGGGGCAGGAGCAAGGCCCTAGGGGGCAGGAGCCACGCCCTGGCTTCCTGGAGCAGAA
GGAACAGCCAGAGGCTGAGGCTCAGGCGTTAAGGCAAGAGTTGGAGAGGCAGCAGCGGGT
GCTGGGGTCTGTGCAGCAGGACCTGGAGCGGAGCTTGAGGGATGCGGGCCTGGCTGAGCT
GGGCCACAGACTGGTCCAGAAGCTGCAAGGCCTGGAGAACTGGGGCCAGCTCTCTGGGGT
CCCTGCTAATGTCTCAGAGGCCTGGCGTCAGGAACCTCACTTCCACAGTTCCAGAGAGCG
GAGTGGAAAGGAAAAGTGGTGGGATGGGCAGAGGGACCGGAAGACGGAGCGCTGGAAACA
CAAGAAGGAGCAATCTGGCTGGAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
136-275, + strand, RNAmicro p=0.938273 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
136-275, + strand, RNAmicro p=0.938273 |
|
56-687, gnl|bosTau2|chr3 (9035279-9034645) |
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56-687, gnl|canFam2|chr7 (45497192-45496599) |
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56-687, gnl|echTel1|scaffold_297281 (995-1550) |
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56-687, gnl|hg17|chr1 (151731649-151732263) |
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56-687, gnl|Hg17|chr1 (151732355-151731715) |
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56-687, gnl|mm7|chr3 (89574416-89573802) |
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56-687, gnl|Mm7|chr3 (89573708-89574351) |
|
56-687, gnl|monDom2|scaffold_59 (2851093-2850473) |
|
56-687, gnl|oryCun1|scaffold_196054 (24275-23660) |
|
56-687, gnl|panTro1|chr1_random (24742040-24741426) |
|
56-687, gnl|rheMac2|chr1 (133490106-133490720) |
|
56-687, gnl|rn3|chr2 (181596092-181595478) |
|
56-687, gnl|xenTro1|scaffold_1426 (44526-45155) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
56-687, gnl|bosTau2|chr3 (9035279-9034645) |
|
56-687, gnl|canFam2|chr7 (45497192-45496599) |
|
56-687, gnl|echTel1|scaffold_297281 (995-1550) |
|
56-687, gnl|hg17|chr1 (151731649-151732263) |
|
56-687, gnl|Hg17|chr1 (151732355-151731715) |
|
56-687, gnl|mm7|chr3 (89574416-89573802) |
|
56-687, gnl|Mm7|chr3 (89573708-89574351) |
|
56-687, gnl|monDom2|scaffold_59 (2851093-2850473) |
|
56-687, gnl|oryCun1|scaffold_196054 (24275-23660) |
|
56-687, gnl|panTro1|chr1_random (24742040-24741426) |
|
56-687, gnl|rheMac2|chr1 (133490106-133490720) |
|
56-687, gnl|rn3|chr2 (181596092-181595478) |
|
56-687, gnl|xenTro1|scaffold_1426 (44526-45155) |
