Non-Coding RNA Search

Pig3-SRG8026F16

Sequence:


               
               TCTAGATTTGATGAAGTCTGGACAAACTCACTGGACCTTACAGGGAGCTCTGGAGCTTGA
CATTGACCTGTCAGAATTGTCCCAGGTTTTACTGAAATTAAAATGGTCCCACCTTGATAG
CCCTGCCTCCAACAGTTAATGGATGTGGCCTCCATGAAGAGTGTGACTTATGGCTGCTCC
CCAAACAATCCCTTAAGGAATGACAGCTGCAGGCTTTCTGCCAACAGCACTTCCAGTAGC
TGAGACAAGCCCATCCTTGACAATGCATCTGGGTAGAACATCTCTATGTCTATGACATGG
TTGCTTGATGAAAATCACATAGTTACAGGAAGAGCCTAGATTCAAACTAAGCATTTATAT
CCACAGTCTGTGTTCTTTTTTTTTTTTTTTTAATTTTATTGGGGTAGAGTTGACTTANAA
TATTGTATGacagatggccaacaaacacatgaaaaaatgctcaacatcgctgattataag
agaaatgcaaatcaaaactaccatgagatatcacctcacaccagtcagaatgaccatcat
taataaatccacaaataacaagtgctggaggggctgtggaaaaaagggaaccctcctgta
ctgttggtgggaatgtaaactggtac

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGATTTGATGAAGTCTGGACAAACTCACTGGACCTTACAGGGAGCTCTGGAGCTTGA
CATTGACCTGTCAGAATTGTCCCAGGTTTTACTGAAATTAAAATGGTCCCACCTTGATAG
CCCTGCCTCCAACAGTTAATGGATGTGGCCTCCATGAAGAGTGTGACTTATGGCTGCTCC
CCAAACAATCCCTTAAGGAATGACAGCTGCAGGCTTTCTGCCAACAGCACTTCCAGTAGC
TGAGACAAGCCCATCCTTGACAATGCATCTGGGTAGAACATCTCTATGTCTATGACATGG
TTGCTTGATGAAAATCACATAGTTACAGGAAGAGCCTAGATTCAAACTAAGCATTTATAT
CCACAGTCTGTGTTCTTTTTTTTTTTTTTTTAATTTTATTGGGGTAGAGTTGACTTANAA
TATTGTATGacagatggccaacaaacacatgaaaaaatgctcaacatcgctgattataag
agaaatgcaaatcaaaactaccatgagatatcacctcacaccagtcagaatgaccatcat
taataaatccacaaataacaagtgctggaggggctgtggaaaaaagggaaccctcctgta
ctgttggtgggaatgtaaactggtac

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               133-280, - strand, RNAz p=0.999487

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-280, - strand, RNAz p=0.999487

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-367, gnl|bosTau2|chr1 (68469364-68468995)
               

               
               1-367, gnl|Hg17|chr3 (166555446-166555868)
               


               
               368-589, gnl|bosTau2|chr5 (8151073-8150858)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-367, gnl|bosTau2|chr1 (68469364-68468995)
               

               
               1-367, gnl|Hg17|chr3 (166555446-166555868)
               


               
               368-589, gnl|bosTau2|chr5 (8151073-8150858)

	1-367, gnl\|bosTau2\|chr1 (68469364-68468995)
	1-367, gnl\|Hg17\|chr3 (166555446-166555868)

	368-589, gnl\|bosTau2\|chr5 (8151073-8150858)