Non-Coding RNA Search

Pig3-SRG8026J02

Sequence:


               
               GTTTTTGGTCAAGAAGAACGGAGCTCCTTGCCACACGGGGCTCCCAACATAGCAACGTGT
CCACCAAAGCCAGCGAGGGAGAGGGTCTGCCAGCAAAACACCATCGCGGACTTGTGATCT
GGTGATGGAAGAGGCAGCCCCTGAACACCTGAGTCAGGCCTCCCTGGGGCCATCCCAGAA
CGGCCTGCCACGGCGAGGCCACAGTGGGCACTCCCGTGGGCAGTCCTGGCACCAGGGACG
TGAGCAAAGAGCCTGTCACGTGGTCTCCTTGCTGCACCTTGTCTCATCGTTGGCAGGTCT
GAGGCCCCTGCCCCGGCCACAGCCTCTGCCAGCTGCCTCTGTTCTAAGCTCCACTGCCCC
TGCTCACTGATTCTTCTCTTCAGCCAGTTTCTTTCTAGTCCTTCCCCTGGCTGATCCCCC
GGGGTTTCTGGGCCCAAATGCTCAGCCTTGACTTTGGCCAACTGCGGCCATTGCTCTTGT
CTTCTGGCCTGAGAGGGGCCAGGGCACCCCCAGGGTGCAGCCACCTTTGCTTCTGCAGCT
CANCTCAACTGCCTTCTCCCCTGCTTGGCTCANCATCTCTGCTGCTGACTGTTCTCTGAC
TTGTGGCTGTCCCCGAGCTTGAACTTGTCAAATGACTGAGGCCTTGCTGCGTGTGTCCAA
TTTACGGGAAAGGTGTGGCTGCACTGACACTCTGCCATGCAATGTGGGCGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTGGTCAAGAAGAACGGAGCTCCTTGCCACACGGGGCTCCCAACATAGCAACGTGT
CCACCAAAGCCAGCGAGGGAGAGGGTCTGCCAGCAAAACACCATCGCGGACTTGTGATCT
GGTGATGGAAGAGGCAGCCCCTGAACACCTGAGTCAGGCCTCCCTGGGGCCATCCCAGAA
CGGCCTGCCACGGCGAGGCCACAGTGGGCACTCCCGTGGGCAGTCCTGGCACCAGGGACG
TGAGCAAAGAGCCTGTCACGTGGTCTCCTTGCTGCACCTTGTCTCATCGTTGGCAGGTCT
GAGGCCCCTGCCCCGGCCACAGCCTCTGCCAGCTGCCTCTGTTCTAAGCTCCACTGCCCC
TGCTCACTGATTCTTCTCTTCAGCCAGTTTCTTTCTAGTCCTTCCCCTGGCTGATCCCCC
GGGGTTTCTGGGCCCAAATGCTCAGCCTTGACTTTGGCCAACTGCGGCCATTGCTCTTGT
CTTCTGGCCTGAGAGGGGCCAGGGCACCCCCAGGGTGCAGCCACCTTTGCTTCTGCAGCT
CANCTCAACTGCCTTCTCCCCTGCTTGGCTCANCATCTCTGCTGCTGACTGTTCTCTGAC
TTGTGGCTGTCCCCGAGCTTGAACTTGTCAAATGACTGAGGCCTTGCTGCGTGTGTCCAA
TTTACGGGAAAGGTGTGGCTGCACTGACACTCTGCCATGCAATGTGGGCGTGTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               298-412, - strand, RNAz p=0.568937
               

               
               453-564, - strand, RNAz p=0.795611

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-412, - strand, RNAz p=0.568937
               

               
               453-564, - strand, RNAz p=0.795611

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               73-712, gnl|bosTau2|chr19 (48638466-48639115)
               

               
               73-712, gnl|Hg17|chr17 (72780205-72779189)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-712, gnl|bosTau2|chr19 (48638466-48639115)
               

               
               73-712, gnl|Hg17|chr17 (72780205-72779189)

	298-412, - strand, RNAz p=0.568937
	453-564, - strand, RNAz p=0.795611

	73-712, gnl\|bosTau2\|chr19 (48638466-48639115)
	73-712, gnl\|Hg17\|chr17 (72780205-72779189)