Non-Coding RNA Search

Pig3-SRG8026O18

Sequence:


               
               CAACGCCCGACATGAGGCATCAGCCCAAATTGATGAGATTGTGGGAGAGACAGCAAGTGA
GGCAGACAGCAGTGAAACCTCATGTCTCTGAGAAAGAGAATGGGCATGAGAAGGACGATG
ATGTTATCCGTTGTATCTGTGGCCTCTACAAGGACGAAAGCCTCATGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGCCCGACATGAGGCATCAGCCCAAATTGATGAGATTGTGGGAGAGACAGCAAGTGA
GGCAGACAGCAGTGAAACCTCATGTCTCTGAGAAAGAGAATGGGCATGAGAAGGACGATG
ATGTTATCCGTTGTATCTGTGGCCTCTACAAGGACGAAAGCCTCATGATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-170, - strand, RNAz p=0.950368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-170, - strand, RNAz p=0.950368

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-170, gnl|bosTau2|chr3 (9627577-9627409)
               

               
               1-170, gnl|canFam2|chr7 (45191024-45190747)
               

               
               1-170, gnl|danRer3|chr19 (14056275-14056574)
               

               
               1-170, gnl|dasNov1|scaffold_100423 (3462-3202)
               

               
               1-170, gnl|echTel1|scaffold_312049 (32750-32472)
               

               
               1-170, gnl|fr1|chrUn (189326024-189325731)
               

               
               1-170, gnl|galGal2|chrE26C13 (47360-47636)
               

               
               1-170, gnl|hg17|chr1 (152130514-152130791)
               

               
               1-170, gnl|Hg17|chr1 (152130706-152130538)
               

               
               1-170, gnl|loxAfr1|scaffold_15093 (38460-38738)
               

               
               1-170, gnl|mm7|chr3 (89180229-89179955)
               

               
               1-170, gnl|Mm7|chr3 (89180035-89180203)
               

               
               1-170, gnl|monDom2|scaffold_59 (2263517-2263240)
               

               
               1-170, gnl|oryCun1|scaffold_178875 (46969-46691)
               

               
               1-170, gnl|panTro1|chr1 (134123115-134123392)
               

               
               1-170, gnl|rheMac2|chr1 (133911126-133911403)
               

               
               1-170, gnl|rn3|chr2 (181088652-181088376)
               

               
               1-170, gnl|tetNig1|chr21_random (2121440-2121153)
               

               
               1-170, gnl|xenTro1|scaffold_1402 (92149-91881)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr3 (9627577-9627409)
               

               
               1-170, gnl|canFam2|chr7 (45191024-45190747)
               

               
               1-170, gnl|danRer3|chr19 (14056275-14056574)
               

               
               1-170, gnl|dasNov1|scaffold_100423 (3462-3202)
               

               
               1-170, gnl|echTel1|scaffold_312049 (32750-32472)
               

               
               1-170, gnl|fr1|chrUn (189326024-189325731)
               

               
               1-170, gnl|galGal2|chrE26C13 (47360-47636)
               

               
               1-170, gnl|hg17|chr1 (152130514-152130791)
               

               
               1-170, gnl|Hg17|chr1 (152130706-152130538)
               

               
               1-170, gnl|loxAfr1|scaffold_15093 (38460-38738)
               

               
               1-170, gnl|mm7|chr3 (89180229-89179955)
               

               
               1-170, gnl|Mm7|chr3 (89180035-89180203)
               

               
               1-170, gnl|monDom2|scaffold_59 (2263517-2263240)
               

               
               1-170, gnl|oryCun1|scaffold_178875 (46969-46691)
               

               
               1-170, gnl|panTro1|chr1 (134123115-134123392)
               

               
               1-170, gnl|rheMac2|chr1 (133911126-133911403)
               

               
               1-170, gnl|rn3|chr2 (181088652-181088376)
               

               
               1-170, gnl|tetNig1|chr21_random (2121440-2121153)
               

               
               1-170, gnl|xenTro1|scaffold_1402 (92149-91881)

	1-170, gnl\|bosTau2\|chr3 (9627577-9627409)
	1-170, gnl\|canFam2\|chr7 (45191024-45190747)
	1-170, gnl\|danRer3\|chr19 (14056275-14056574)
	1-170, gnl\|dasNov1\|scaffold_100423 (3462-3202)
	1-170, gnl\|echTel1\|scaffold_312049 (32750-32472)
	1-170, gnl\|fr1\|chrUn (189326024-189325731)
	1-170, gnl\|galGal2\|chrE26C13 (47360-47636)
	1-170, gnl\|hg17\|chr1 (152130514-152130791)
	1-170, gnl\|Hg17\|chr1 (152130706-152130538)
	1-170, gnl\|loxAfr1\|scaffold_15093 (38460-38738)
	1-170, gnl\|mm7\|chr3 (89180229-89179955)
	1-170, gnl\|Mm7\|chr3 (89180035-89180203)
	1-170, gnl\|monDom2\|scaffold_59 (2263517-2263240)
	1-170, gnl\|oryCun1\|scaffold_178875 (46969-46691)
	1-170, gnl\|panTro1\|chr1 (134123115-134123392)
	1-170, gnl\|rheMac2\|chr1 (133911126-133911403)
	1-170, gnl\|rn3\|chr2 (181088652-181088376)
	1-170, gnl\|tetNig1\|chr21_random (2121440-2121153)
	1-170, gnl\|xenTro1\|scaffold_1402 (92149-91881)