Non-Coding RNA Search

Pig3-SRG8026P04

Sequence:


               
               GACACTCTGCATGTATCTGTGTTTTTCACAGAAGCCAGCCACCAAACCCAAGCCAAACCC
TGGAAAAGAGCTGCTGCATTTACCCAGGCTCCTCTGCCCCTCGGGCAGCCCTCTTAGTGG
ACCCTCTCTTCCCATGCCCTGGGTGAGGGGGACCTCCTGGCCATGGCAACCCACAGAGGC
GGAGACCACAGGAGCTGTGGCCCAGGCAGCTCCATCTTACTGTAACTTTTTACATTCTTC
ACAAACAAAAAGCACAATTTCACAGGCACACTGTCTGGAAAGCACATTCAGGCAGACTGC
TTGAGGCACTTTTAAGTCCATAGGAGGCGCGCTGGCTGGGGCTTGTTTCTTTCTTGGAAT
GGTTGTTGTAAAAATGTGCTGATCAGTGCCACCGCCGAAGGGGCCACACTCTGTGTGGGG
GGGTCGGTGGGAGGGGACAGGGAGCCGGGGGTAGGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACTCTGCATGTATCTGTGTTTTTCACAGAAGCCAGCCACCAAACCCAAGCCAAACCC
TGGAAAAGAGCTGCTGCATTTACCCAGGCTCCTCTGCCCCTCGGGCAGCCCTCTTAGTGG
ACCCTCTCTTCCCATGCCCTGGGTGAGGGGGACCTCCTGGCCATGGCAACCCACAGAGGC
GGAGACCACAGGAGCTGTGGCCCAGGCAGCTCCATCTTACTGTAACTTTTTACATTCTTC
ACAAACAAAAAGCACAATTTCACAGGCACACTGTCTGGAAAGCACATTCAGGCAGACTGC
TTGAGGCACTTTTAAGTCCATAGGAGGCGCGCTGGCTGGGGCTTGTTTCTTTCTTGGAAT
GGTTGTTGTAAAAATGTGCTGATCAGTGCCACCGCCGAAGGGGCCACACTCTGTGTGGGG
GGGTCGGTGGGAGGGGACAGGGAGCCGGGGGTAGGGGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               152-257, - strand, RNAz p=0.636528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-257, - strand, RNAz p=0.636528

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-445, gnl|bosTau2|chr11 (19869331-19869754)
               

               
               2-445, gnl|canFam2|chr10 (52744009-52744404)
               

               
               2-445, gnl|hg17|chr2 (47655718-47656127)
               

               
               2-445, gnl|Hg17|chr2 (47656216-47655738)
               

               
               2-445, gnl|loxAfr1|scaffold_25858 (22939-22531)
               

               
               2-445, gnl|mm7|chr17 (86044483-86044838)
               

               
               2-445, gnl|Mm7|chr17 (86044920-86044501)
               

               
               2-445, gnl|monDom2|scaffold_1 (7515135-7515577)
               

               
               2-445, gnl|oryCun1|scaffold_179529 (6440-6796)
               

               
               2-445, gnl|rheMac2|chr13 (47633629-47634042)
               

               
               2-445, gnl|rn3|chr6 (11277884-11278229)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-445, gnl|bosTau2|chr11 (19869331-19869754)
               

               
               2-445, gnl|canFam2|chr10 (52744009-52744404)
               

               
               2-445, gnl|hg17|chr2 (47655718-47656127)
               

               
               2-445, gnl|Hg17|chr2 (47656216-47655738)
               

               
               2-445, gnl|loxAfr1|scaffold_25858 (22939-22531)
               

               
               2-445, gnl|mm7|chr17 (86044483-86044838)
               

               
               2-445, gnl|Mm7|chr17 (86044920-86044501)
               

               
               2-445, gnl|monDom2|scaffold_1 (7515135-7515577)
               

               
               2-445, gnl|oryCun1|scaffold_179529 (6440-6796)
               

               
               2-445, gnl|rheMac2|chr13 (47633629-47634042)
               

               
               2-445, gnl|rn3|chr6 (11277884-11278229)

	2-445, gnl\|bosTau2\|chr11 (19869331-19869754)
	2-445, gnl\|canFam2\|chr10 (52744009-52744404)
	2-445, gnl\|hg17\|chr2 (47655718-47656127)
	2-445, gnl\|Hg17\|chr2 (47656216-47655738)
	2-445, gnl\|loxAfr1\|scaffold_25858 (22939-22531)
	2-445, gnl\|mm7\|chr17 (86044483-86044838)
	2-445, gnl\|Mm7\|chr17 (86044920-86044501)
	2-445, gnl\|monDom2\|scaffold_1 (7515135-7515577)
	2-445, gnl\|oryCun1\|scaffold_179529 (6440-6796)
	2-445, gnl\|rheMac2\|chr13 (47633629-47634042)
	2-445, gnl\|rn3\|chr6 (11277884-11278229)