Pig3-SRG8028B06
|
AAGATGAAGAACTGGACCTCTCAATGGAACAAGGAAGTTCAGCAGAGACTGAAAATATTC
CAGTGACAAAAGCTGAAACAATATGTTCTAGTGAAGCAGACGTTCCTGTGGCAATGAAAA
CCCACCAGATTCCTTCAAAAATTCTTTTTAAAAAATTGTTAAATAAGATCCGAAGCCAAA
AATCTCTCTGGACAATTAAATCCATGTCTGAGGAGGAAAGTGAAATGATTACAACTGTTA
GTGAAACTGAAAGTAAAGCTCTGACAATTGAAACAGGAGCAACTGTGAGCGAAGACGGAA
CATTATCCTCTGGGCAGGAACAAGTTGTTGAAAGTGACATGCTTACGGTTGACTCTGGAC
CACTTACTAGTGAAGATAAACCACTTACTTCTAATACAGACTCTGAAAAGGAACAAGAAG
TGAATGAAACTCAGCCTATCACAGCTGTAGCTCAGAGTTCAGTTCTACTTCATCCTCATG
AAGAAGCAGCCAGAATTAGAATGGCAGCAAGGCAGAGACAGATAATGGAAATAGAAGAAC
AGAAGCAAAAGCAGTTGGAATTACTTGAAAAAATTGAACAACAGAAGTTAAGATTAGAAA
CTGATTGCTCCAGGGCTCAGCTGGAAGAAGAGAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGATGAAGAACTGGACCTCTCAATGGAACAAGGAAGTTCAGCAGAGACTGAAAATATTC
CAGTGACAAAAGCTGAAACAATATGTTCTAGTGAAGCAGACGTTCCTGTGGCAATGAAAA
CCCACCAGATTCCTTCAAAAATTCTTTTTAAAAAATTGTTAAATAAGATCCGAAGCCAAA
AATCTCTCTGGACAATTAAATCCATGTCTGAGGAGGAAAGTGAAATGATTACAACTGTTA
GTGAAACTGAAAGTAAAGCTCTGACAATTGAAACAGGAGCAACTGTGAGCGAAGACGGAA
CATTATCCTCTGGGCAGGAACAAGTTGTTGAAAGTGACATGCTTACGGTTGACTCTGGAC
CACTTACTAGTGAAGATAAACCACTTACTTCTAATACAGACTCTGAAAAGGAACAAGAAG
TGAATGAAACTCAGCCTATCACAGCTGTAGCTCAGAGTTCAGTTCTACTTCATCCTCATG
AAGAAGCAGCCAGAATTAGAATGGCAGCAAGGCAGAGACAGATAATGGAAATAGAAGAAC
AGAAGCAAAAGCAGTTGGAATTACTTGAAAAAATTGAACAACAGAAGTTAAGATTAGAAA
CTGATTGCTCCAGGGCTCAGCTGGAAGAAGAGAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
102-324, gnl|bosTau2|chr29 (513563-513785) |
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102-324, gnl|Hg17|chr11 (93060457-93060679) |
|
102-324, gnl|Mm7|chr9 (15177026-15176801) |
| |
|
520-636, gnl|bosTau2|chr29 (519023-519139) |
|
520-636, gnl|canFam2|chr21 (10042731-10042586) |
|
520-636, gnl|echTel1|scaffold_316886 (45492-45344) |
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520-636, gnl|galGal2|chr1 (177645395-177645274) |
|
520-636, gnl|hg17|chr11 (93068309-93068457) |
|
520-636, gnl|Hg17|chr11 (93068309-93068425) |
|
520-636, gnl|mm7|chr9 (15174593-15174448) |
|
520-636, gnl|Mm7|chr9 (15174591-15174478) |
|
520-636, gnl|monDom2|scaffold_15 (4353463-4353297) |
|
520-636, gnl|oryCun1|scaffold_163659 (10669-10817) |
|
520-636, gnl|panTro1|chr9 (94969998-94970146) |
|
520-636, gnl|rheMac2|chr14 (92256419-92256564) |
|
520-636, gnl|rn3|chr8 (12132681-12132536) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
102-324, gnl|bosTau2|chr29 (513563-513785) |
|
102-324, gnl|Hg17|chr11 (93060457-93060679) |
|
102-324, gnl|Mm7|chr9 (15177026-15176801) |
| |
|
520-636, gnl|bosTau2|chr29 (519023-519139) |
|
520-636, gnl|canFam2|chr21 (10042731-10042586) |
|
520-636, gnl|echTel1|scaffold_316886 (45492-45344) |
|
520-636, gnl|galGal2|chr1 (177645395-177645274) |
|
520-636, gnl|hg17|chr11 (93068309-93068457) |
|
520-636, gnl|Hg17|chr11 (93068309-93068425) |
|
520-636, gnl|mm7|chr9 (15174593-15174448) |
|
520-636, gnl|Mm7|chr9 (15174591-15174478) |
|
520-636, gnl|monDom2|scaffold_15 (4353463-4353297) |
|
520-636, gnl|oryCun1|scaffold_163659 (10669-10817) |
|
520-636, gnl|panTro1|chr9 (94969998-94970146) |
|
520-636, gnl|rheMac2|chr14 (92256419-92256564) |
|
520-636, gnl|rn3|chr8 (12132681-12132536) |
