Pig3-SRG8028D05
|
TTTGATCAGACATTGTCCGAAAGTGTCACGTCTATCCAGGGTGGTTGCGTAGGGAAAGCT
GGCTATGATGAAATCGTGGTATCCACATACTCAGGCTGGGTTACAGGTCTGACAACAGAG
CCTATTCATAAGGAAAGTGGACCAGGCGAAGAACTAAAAATTAATCCAGAGATACAGAAT
AAAATTTCCTCTTTACGGAGTGAGTTGGAACATCTGCAGTATAAGGTACTACAGGAAAGA
GAGAAATACCAACAGTCTTCTCAATCAAGCAAAGCAAAATCAGCTGTACCTTCATTTAGT
ATAAATGACAAGTTTACATTAAATAAAGATGATGCCAGCTACAGCCTTATCTTAGAGGTG
CAGACAGCGATAGATAATGTCTTAATACAGAGTGATGTTCCAATAGATTTACTTGATATG
GATAAAAATTCTGCCGTCGTCAGCTTTAGCAGCTGTGATTCTGAGTCAAATGAGAACTTT
CTTCTTGCCACTTATCGGTGTCAGGCAAATACCACAAGGCTGGAACTCAAGATTCGCTCA
ATTGAAGGCCAGTATGGCACACTTCAAGCATATGTGACTCCAAGAATTCAACCCAAAACA
GTCAGGTCCGCCAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTGATCAGACATTGTCCGAAAGTGTCACGTCTATCCAGGGTGGTTGCGTAGGGAAAGCT
GGCTATGATGAAATCGTGGTATCCACATACTCAGGCTGGGTTACAGGTCTGACAACAGAG
CCTATTCATAAGGAAAGTGGACCAGGCGAAGAACTAAAAATTAATCCAGAGATACAGAAT
AAAATTTCCTCTTTACGGAGTGAGTTGGAACATCTGCAGTATAAGGTACTACAGGAAAGA
GAGAAATACCAACAGTCTTCTCAATCAAGCAAAGCAAAATCAGCTGTACCTTCATTTAGT
ATAAATGACAAGTTTACATTAAATAAAGATGATGCCAGCTACAGCCTTATCTTAGAGGTG
CAGACAGCGATAGATAATGTCTTAATACAGAGTGATGTTCCAATAGATTTACTTGATATG
GATAAAAATTCTGCCGTCGTCAGCTTTAGCAGCTGTGATTCTGAGTCAAATGAGAACTTT
CTTCTTGCCACTTATCGGTGTCAGGCAAATACCACAAGGCTGGAACTCAAGATTCGCTCA
ATTGAAGGCCAGTATGGCACACTTCAAGCATATGTGACTCCAAGAATTCAACCCAAAACA
GTCAGGTCCGCCAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
248-398, - strand, RNAmicro p=0.999992 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
248-398, - strand, RNAmicro p=0.999992 |
|
180-390, gnl|bosTau2|chr6 (844857-845064) |
|
180-390, gnl|canFam2|chr19 (21308698-21308462) |
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180-390, gnl|danRer3|chrUn (45145907-45145681) |
|
180-390, gnl|dasNov1|scaffold_18711 (356-117) |
|
180-390, gnl|fr1|chrUn (69233378-69233627) |
|
180-390, gnl|galGal2|chr4 (54462220-54461990) |
|
180-390, gnl|hg17|chr4 (123124239-123124479) |
|
180-390, gnl|Hg17|chr4 (123124473-123124238) |
|
180-390, gnl|loxAfr1|scaffold_923 (45398-45158) |
|
180-390, gnl|mm7|chr3 (36405124-36405366) |
|
180-390, gnl|Mm7|chr3 (36405360-36405149) |
|
180-390, gnl|monDom2|scaffold_32 (5489550-5489311) |
|
180-390, gnl|oryCun1|scaffold_203692 (102172-101932) |
|
180-390, gnl|panTro1|chr3 (139959322-139959562) |
|
180-390, gnl|rheMac2|chr5 (114221272-114221512) |
|
180-390, gnl|rn3|chr2 (123036157-123036395) |
|
180-390, gnl|tetNig1|chr20 (1905203-1905414) |
|
180-390, gnl|xenTro1|scaffold_1082 (299993-299753) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
180-390, gnl|bosTau2|chr6 (844857-845064) |
|
180-390, gnl|canFam2|chr19 (21308698-21308462) |
|
180-390, gnl|danRer3|chrUn (45145907-45145681) |
|
180-390, gnl|dasNov1|scaffold_18711 (356-117) |
|
180-390, gnl|fr1|chrUn (69233378-69233627) |
|
180-390, gnl|galGal2|chr4 (54462220-54461990) |
|
180-390, gnl|hg17|chr4 (123124239-123124479) |
|
180-390, gnl|Hg17|chr4 (123124473-123124238) |
|
180-390, gnl|loxAfr1|scaffold_923 (45398-45158) |
|
180-390, gnl|mm7|chr3 (36405124-36405366) |
|
180-390, gnl|Mm7|chr3 (36405360-36405149) |
|
180-390, gnl|monDom2|scaffold_32 (5489550-5489311) |
|
180-390, gnl|oryCun1|scaffold_203692 (102172-101932) |
|
180-390, gnl|panTro1|chr3 (139959322-139959562) |
|
180-390, gnl|rheMac2|chr5 (114221272-114221512) |
|
180-390, gnl|rn3|chr2 (123036157-123036395) |
|
180-390, gnl|tetNig1|chr20 (1905203-1905414) |
|
180-390, gnl|xenTro1|scaffold_1082 (299993-299753) |
