Non-Coding RNA Search

Pig4-TMW8001E15

Sequence:


               
               GGGGAAAGAGGGGTTCACTCTGGAACCCACAGACCTGTGTGGGTTCAGCTTATGCCTTCC
CACTCAAGACCGCTGAACCTCCCTGAGCCTCAGCTTCCTGCCTCTGAAAGGGGACTGGTA
GAGCTTTGCAGGGCCTTGGGGAGGACTCAATGATGACTAAAATATTAGATGCAATGCACA
GTACATAGAAGGTACTCAGATGAGTATATCATTTTCCAGAAAACTGAGGACCACAGAGGG
AAGGTGTCTTGTCCAAGCTCATGCGAGGGGTTAGCAGAAGAGCTGGAACCAAGCCCCTAC
TCCAGAATTTGTACTGAGCCATCCTCTCTCAAGGAGGCTGAGAACCAGGGGTAGCCCAGG
AGTCTCCAGATGAGGCAGTGGGATTGGGTTTNGGGGTTGCTGGCTCCCCCATTCCTGGCT
CTCAGGAGTGGTCAGGGCTAGCTCTAGACCTCCCCAGGCCAAGAATAGGACCATCCTTGC
TTTGGGGAGACCCTCATGCCCCAGGCGCTGTCAGTCAATGAGATTCACTGAGCACACCGA
GCACTGACCAGTGGAAGGCTGCATTTTGGAGGTAGGGGGAATTGAAGTTGCCATCACTTG
GGGGTCCCCTTTGGGTCCTCAGACCTTCCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAAAGAGGGGTTCACTCTGGAACCCACAGACCTGTGTGGGTTCAGCTTATGCCTTCC
CACTCAAGACCGCTGAACCTCCCTGAGCCTCAGCTTCCTGCCTCTGAAAGGGGACTGGTA
GAGCTTTGCAGGGCCTTGGGGAGGACTCAATGATGACTAAAATATTAGATGCAATGCACA
GTACATAGAAGGTACTCAGATGAGTATATCATTTTCCAGAAAACTGAGGACCACAGAGGG
AAGGTGTCTTGTCCAAGCTCATGCGAGGGGTTAGCAGAAGAGCTGGAACCAAGCCCCTAC
TCCAGAATTTGTACTGAGCCATCCTCTCTCAAGGAGGCTGAGAACCAGGGGTAGCCCAGG
AGTCTCCAGATGAGGCAGTGGGATTGGGTTTNGGGGTTGCTGGCTCCCCCATTCCTGGCT
CTCAGGAGTGGTCAGGGCTAGCTCTAGACCTCCCCAGGCCAAGAATAGGACCATCCTTGC
TTTGGGGAGACCCTCATGCCCCAGGCGCTGTCAGTCAATGAGATTCACTGAGCACACCGA
GCACTGACCAGTGGAAGGCTGCATTTTGGAGGTAGGGGGAATTGAAGTTGCCATCACTTG
GGGGTCCCCTTTGGGTCCTCAGACCTTCCTCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               286-505, - strand, RNAz p=0.968798
               

               
               325-504, + strand, RNAz p=0.978712

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               286-505, - strand, RNAz p=0.968798
               

               
               325-504, + strand, RNAz p=0.978712

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               449-522, - strand, RNAmicro p=0.972098

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               449-522, - strand, RNAmicro p=0.972098

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               4-627, gnl|bosTau2|chr22 (38842842-38843465)
               

               
               4-627, gnl|canFam2|chr20 (41789139-41788477)
               

               
               4-627, gnl|dasNov1|scaffold_29778 (19850-20389)
               

               
               4-627, gnl|hg17|chr3 (50591412-50592118)
               

               
               4-627, gnl|Hg17|chr3 (50591483-50592164)
               

               
               4-627, gnl|mm7|chr9 (107058735-107058120)
               

               
               4-627, gnl|Mm7|chr9 (107058672-107058087)
               

               
               4-627, gnl|oryCun1|scaffold_202694 (149901-150496)
               

               
               4-627, gnl|panTro1|chr2 (52171456-52172163)
               

               
               4-627, gnl|rheMac2|chr2 (85837140-85836443)
               

               
               4-627, gnl|rn3|chr8 (112589380-112588802)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-627, gnl|bosTau2|chr22 (38842842-38843465)
               

               
               4-627, gnl|canFam2|chr20 (41789139-41788477)
               

               
               4-627, gnl|dasNov1|scaffold_29778 (19850-20389)
               

               
               4-627, gnl|hg17|chr3 (50591412-50592118)
               

               
               4-627, gnl|Hg17|chr3 (50591483-50592164)
               

               
               4-627, gnl|mm7|chr9 (107058735-107058120)
               

               
               4-627, gnl|Mm7|chr9 (107058672-107058087)
               

               
               4-627, gnl|oryCun1|scaffold_202694 (149901-150496)
               

               
               4-627, gnl|panTro1|chr2 (52171456-52172163)
               

               
               4-627, gnl|rheMac2|chr2 (85837140-85836443)
               

               
               4-627, gnl|rn3|chr8 (112589380-112588802)

	286-505, - strand, RNAz p=0.968798
	325-504, + strand, RNAz p=0.978712

	4-627, gnl\|bosTau2\|chr22 (38842842-38843465)
	4-627, gnl\|canFam2\|chr20 (41789139-41788477)
	4-627, gnl\|dasNov1\|scaffold_29778 (19850-20389)
	4-627, gnl\|hg17\|chr3 (50591412-50592118)
	4-627, gnl\|Hg17\|chr3 (50591483-50592164)
	4-627, gnl\|mm7\|chr9 (107058735-107058120)
	4-627, gnl\|Mm7\|chr9 (107058672-107058087)
	4-627, gnl\|oryCun1\|scaffold_202694 (149901-150496)
	4-627, gnl\|panTro1\|chr2 (52171456-52172163)
	4-627, gnl\|rheMac2\|chr2 (85837140-85836443)
	4-627, gnl\|rn3\|chr8 (112589380-112588802)