Non-Coding RNA Search

Pig4-TMW8001I03

Sequence:


               
               CTGTTCTGAGCTCCTTGCTTGGAACTCCACAATAAAACACCAAACTTTCCCTTCACCACA
AACTAGTGTCAGGAGATTGGTTTTACTGTGCACAGAATGGATTCCTGCTGAGTGCCACCC
AGCAGAAATTACAACCCATGGGAGGTCAGACAGCCAAAATCCCACCTCACTGACACCAGA
GGGGAAGAATCATTTGATAAATGCGAATCTGAAAAACCACCTCGCTGGGAAGAGCCAAAA
AAACTCAATCACCATCTGCGGGACTCACCAGAAGAGCCAGGAGAGAATTCCTCATTCCTG
GATAGCCCGGAGGTAGACCTGCCACTTTGTTTTGAACAAACTGTTCTGGTATGGATTCCC
TTGGGCTTCCTTTGGCTCCTGGCTCCTTGGCAGCTTATTCATGTATATAGATCCAGAACC
AAGAGATCTCCCATAACCAAACTCTACCTTGCTAAGCAGGTATGCCTCCCAATTTTCTAA
CTAATTTCTTGGTGCACAAGAGAGACATTTTCTTGGTGGTTAACATGTCATCTTGGTATT
TCACCAGCTTTCCCAGGTGCTGTCACAGGTAGAGCCATGCTCTGGATGTCCCTGTTTCCC
CCTGCCCTATACCTCAGTGACTCCTTTCTGTATTTCTTAGTAAAGATTACTTTGATTTTT
GCCTAAGAATAATGACTCTTAAATCTTACNGATATTGGATTCTGGAAATACCAATGATGA
GTAATCCGTCAGTTGAATGATTAATATTTTTTCAGCATTTGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTCTGAGCTCCTTGCTTGGAACTCCACAATAAAACACCAAACTTTCCCTTCACCACA
AACTAGTGTCAGGAGATTGGTTTTACTGTGCACAGAATGGATTCCTGCTGAGTGCCACCC
AGCAGAAATTACAACCCATGGGAGGTCAGACAGCCAAAATCCCACCTCACTGACACCAGA
GGGGAAGAATCATTTGATAAATGCGAATCTGAAAAACCACCTCGCTGGGAAGAGCCAAAA
AAACTCAATCACCATCTGCGGGACTCACCAGAAGAGCCAGGAGAGAATTCCTCATTCCTG
GATAGCCCGGAGGTAGACCTGCCACTTTGTTTTGAACAAACTGTTCTGGTATGGATTCCC
TTGGGCTTCCTTTGGCTCCTGGCTCCTTGGCAGCTTATTCATGTATATAGATCCAGAACC
AAGAGATCTCCCATAACCAAACTCTACCTTGCTAAGCAGGTATGCCTCCCAATTTTCTAA
CTAATTTCTTGGTGCACAAGAGAGACATTTTCTTGGTGGTTAACATGTCATCTTGGTATT
TCACCAGCTTTCCCAGGTGCTGTCACAGGTAGAGCCATGCTCTGGATGTCCCTGTTTCCC
CCTGCCCTATACCTCAGTGACTCCTTTCTGTATTTCTTAGTAAAGATTACTTTGATTTTT
GCCTAAGAATAATGACTCTTAAATCTTACNGATATTGGATTCTGGAAATACCAATGATGA
GTAATCCGTCAGTTGAATGATTAATATTTTTTCAGCATTTGAGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               323-442, - strand, RNAz p=0.587337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-442, - strand, RNAz p=0.587337

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               284-764, gnl|bosTau2|chr26 (12272317-12272799)
               

               
               284-764, gnl|Hg17|chr10 (101534353-101534814)
               

               
               284-764, gnl|Mm7|chr19 (43678054-43678492)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               284-764, gnl|bosTau2|chr26 (12272317-12272799)
               

               
               284-764, gnl|Hg17|chr10 (101534353-101534814)
               

               
               284-764, gnl|Mm7|chr19 (43678054-43678492)

	284-764, gnl\|bosTau2\|chr26 (12272317-12272799)
	284-764, gnl\|Hg17\|chr10 (101534353-101534814)
	284-764, gnl\|Mm7\|chr19 (43678054-43678492)