Non-Coding RNA Search

Pig4-TMW8002B24

Sequence:


               
               TACCGCATGTGCCCAAGAAATGGCAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAGAG
GAATCATTCCTGTCTCACTGTGTCAGGAAAGGAATATTTCTTGTGCTAAGCAGACCACAG
GGGTCACATTCTTAGCTTCTGGGGAGGAGAGTTAGGTTCCTCTAAAAGTTTCCTTTATGG
GGATTCCCGATGTGGTGCAGCAGAAACCAATCCGAccaggaatcgaacctgcatcctcat
gggtactcgctgggtttgttccccgctgagccacaacaggaactTTGGGAGTTGATGTTT
AACGGGTAGCGTTTCCATTTTGAAAGATGGAAGGGGTTCTGGAGGTGGATGGTGGGAATT
GCATAGCAGTGTGAGCGTGCTTAGTACCCCCGAGCTGTATACATAAAAATGGTTCAGGTG
AGAAGTTTTATGTTCTGCGTGGTTTATCACACTCACACAAAATGATATGGAAAGATGTCC
AAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCGCATGTGCCCAAGAAATGGCAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAGAG
GAATCATTCCTGTCTCACTGTGTCAGGAAAGGAATATTTCTTGTGCTAAGCAGACCACAG
GGGTCACATTCTTAGCTTCTGGGGAGGAGAGTTAGGTTCCTCTAAAAGTTTCCTTTATGG
GGATTCCCGATGTGGTGCAGCAGAAACCAATCCGAccaggaatcgaacctgcatcctcat
gggtactcgctgggtttgttccccgctgagccacaacaggaactTTGGGAGTTGATGTTT
AACGGGTAGCGTTTCCATTTTGAAAGATGGAAGGGGTTCTGGAGGTGGATGGTGGGAATT
GCATAGCAGTGTGAGCGTGCTTAGTACCCCCGAGCTGTATACATAAAAATGGTTCAGGTG
AGAAGTTTTATGTTCTGCGTGGTTTATCACACTCACACAAAATGATATGGAAAGATGTCC
AAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               44-162, - strand, RNAz p=0.535142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-162, - strand, RNAz p=0.535142

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               44-178, gnl|bosTau2|chr1 (3535889-3536022)
               

               
               44-178, gnl|canFam2|chr31 (29410945-29411117)
               

               
               44-178, gnl|dasNov1|scaffold_49695 (10447-10735)
               

               
               44-178, gnl|hg17|chr21 (31798795-31799131)
               

               
               44-178, gnl|Hg17|chr21 (31799130-31799007)
               

               
               44-178, gnl|mm7|chr16 (90150319-90150655)
               

               
               44-178, gnl|panTro1|chr22 (31766866-31767201)
               

               
               44-178, gnl|rheMac2|chr3 (15007129-15006798)
               

               
               44-178, gnl|rn3|chr11 (29943177-29942865)
               


               
               287-476, gnl|bosTau2|chr7 (7890147-7889953)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-178, gnl|bosTau2|chr1 (3535889-3536022)
               

               
               44-178, gnl|canFam2|chr31 (29410945-29411117)
               

               
               44-178, gnl|dasNov1|scaffold_49695 (10447-10735)
               

               
               44-178, gnl|hg17|chr21 (31798795-31799131)
               

               
               44-178, gnl|Hg17|chr21 (31799130-31799007)
               

               
               44-178, gnl|mm7|chr16 (90150319-90150655)
               

               
               44-178, gnl|panTro1|chr22 (31766866-31767201)
               

               
               44-178, gnl|rheMac2|chr3 (15007129-15006798)
               

               
               44-178, gnl|rn3|chr11 (29943177-29942865)
               


               
               287-476, gnl|bosTau2|chr7 (7890147-7889953)

	44-178, gnl\|bosTau2\|chr1 (3535889-3536022)
	44-178, gnl\|canFam2\|chr31 (29410945-29411117)
	44-178, gnl\|dasNov1\|scaffold_49695 (10447-10735)
	44-178, gnl\|hg17\|chr21 (31798795-31799131)
	44-178, gnl\|Hg17\|chr21 (31799130-31799007)
	44-178, gnl\|mm7\|chr16 (90150319-90150655)
	44-178, gnl\|panTro1\|chr22 (31766866-31767201)
	44-178, gnl\|rheMac2\|chr3 (15007129-15006798)
	44-178, gnl\|rn3\|chr11 (29943177-29942865)

	287-476, gnl\|bosTau2\|chr7 (7890147-7889953)