Non-Coding RNA Search

Pig4-TMW8003F08

Sequence:


               
               GGCGGCAGCTGGAGCGGGAGGTGCAGCAGCTGCGGGCGGCCATCGAGGAGGACGAGGCCC
TGCTGGGCTTCCAGGAGGACCGCAGCAAGAAGCTGGCGGCCGAGCGGGAGCTGCGGCAGC
TGACCCTGCGGGTCCAGGAGCTGGAGAGGCGGCCTCCCGCGGTGCAGGAGAAGATCGTCA
TGGAGGAGGTGGTGCAGCTGGAGAAGGACCCGGACCTGGAGAAGTCCACGGAGGCCCTGC
GGCGGGCCCTGGAGCAGGAGAAGACGCGGGTGTCGGAGCTGCACCGGGAGTGCAAGAACC
TGCAGGTGCAGATCGACGTCCTCCAGAAAACCAAGTCGCAGGAGAAGACCATCTACAAGG
AAGTGATCAGGGTGGAGAAGGACCGGGTGCTGGAGGGCGAGCGCGCCCGGGCGTGGGAGG
CGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCAGCTGGAGCGGGAGGTGCAGCAGCTGCGGGCGGCCATCGAGGAGGACGAGGCCC
TGCTGGGCTTCCAGGAGGACCGCAGCAAGAAGCTGGCGGCCGAGCGGGAGCTGCGGCAGC
TGACCCTGCGGGTCCAGGAGCTGGAGAGGCGGCCTCCCGCGGTGCAGGAGAAGATCGTCA
TGGAGGAGGTGGTGCAGCTGGAGAAGGACCCGGACCTGGAGAAGTCCACGGAGGCCCTGC
GGCGGGCCCTGGAGCAGGAGAAGACGCGGGTGTCGGAGCTGCACCGGGAGTGCAAGAACC
TGCAGGTGCAGATCGACGTCCTCCAGAAAACCAAGTCGCAGGAGAAGACCATCTACAAGG
AAGTGATCAGGGTGGAGAAGGACCGGGTGCTGGAGGGCGAGCGCGCCCGGGCGTGGGAGG
CGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.803602

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.803602

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-423, gnl|bosTau2|chr19 (49569946-49570368)
               

               
               1-423, gnl|canFam2|chr9 (7626973-7626537)
               

               
               1-423, gnl|danRer3|chrNA (130607967-130607538)
               

               
               1-423, gnl|dasNov1|scaffold_22862 (19193-18757)
               

               
               1-423, gnl|echTel1|scaffold_323920 (195-727)
               

               
               1-423, gnl|fr1|chrUn (300992402-300991966)
               

               
               1-423, gnl|galGal2|chr18 (4386569-4386133)
               

               
               1-423, gnl|hg17|chr17 (71516226-71516662)
               

               
               1-423, gnl|Hg17|chr17 (71516676-71516254)
               

               
               1-423, gnl|loxAfr1|scaffold_2336 (73921-74291)
               

               
               1-423, gnl|mm7|chr11 (116331250-116331686)
               

               
               1-423, gnl|Mm7|chr11 (116331700-116331278)
               

               
               1-423, gnl|monDom2|scaffold_18 (33852890-33853326)
               

               
               1-423, gnl|oryCun1|scaffold_182088 (8751-8315)
               

               
               1-423, gnl|panTro1|chr19 (74874996-74875432)
               

               
               1-423, gnl|rheMac2|chr16 (71338002-71338438)
               

               
               1-423, gnl|rn3|chr10 (106352892-106353328)
               

               
               1-423, gnl|tetNig1|chrUn_random (27230706-27230270)
               

               
               1-423, gnl|xenTro1|scaffold_632 (696677-697113)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-423, gnl|bosTau2|chr19 (49569946-49570368)
               

               
               1-423, gnl|canFam2|chr9 (7626973-7626537)
               

               
               1-423, gnl|danRer3|chrNA (130607967-130607538)
               

               
               1-423, gnl|dasNov1|scaffold_22862 (19193-18757)
               

               
               1-423, gnl|echTel1|scaffold_323920 (195-727)
               

               
               1-423, gnl|fr1|chrUn (300992402-300991966)
               

               
               1-423, gnl|galGal2|chr18 (4386569-4386133)
               

               
               1-423, gnl|hg17|chr17 (71516226-71516662)
               

               
               1-423, gnl|Hg17|chr17 (71516676-71516254)
               

               
               1-423, gnl|loxAfr1|scaffold_2336 (73921-74291)
               

               
               1-423, gnl|mm7|chr11 (116331250-116331686)
               

               
               1-423, gnl|Mm7|chr11 (116331700-116331278)
               

               
               1-423, gnl|monDom2|scaffold_18 (33852890-33853326)
               

               
               1-423, gnl|oryCun1|scaffold_182088 (8751-8315)
               

               
               1-423, gnl|panTro1|chr19 (74874996-74875432)
               

               
               1-423, gnl|rheMac2|chr16 (71338002-71338438)
               

               
               1-423, gnl|rn3|chr10 (106352892-106353328)
               

               
               1-423, gnl|tetNig1|chrUn_random (27230706-27230270)
               

               
               1-423, gnl|xenTro1|scaffold_632 (696677-697113)

	1-423, gnl\|bosTau2\|chr19 (49569946-49570368)
	1-423, gnl\|canFam2\|chr9 (7626973-7626537)
	1-423, gnl\|danRer3\|chrNA (130607967-130607538)
	1-423, gnl\|dasNov1\|scaffold_22862 (19193-18757)
	1-423, gnl\|echTel1\|scaffold_323920 (195-727)
	1-423, gnl\|fr1\|chrUn (300992402-300991966)
	1-423, gnl\|galGal2\|chr18 (4386569-4386133)
	1-423, gnl\|hg17\|chr17 (71516226-71516662)
	1-423, gnl\|Hg17\|chr17 (71516676-71516254)
	1-423, gnl\|loxAfr1\|scaffold_2336 (73921-74291)
	1-423, gnl\|mm7\|chr11 (116331250-116331686)
	1-423, gnl\|Mm7\|chr11 (116331700-116331278)
	1-423, gnl\|monDom2\|scaffold_18 (33852890-33853326)
	1-423, gnl\|oryCun1\|scaffold_182088 (8751-8315)
	1-423, gnl\|panTro1\|chr19 (74874996-74875432)
	1-423, gnl\|rheMac2\|chr16 (71338002-71338438)
	1-423, gnl\|rn3\|chr10 (106352892-106353328)
	1-423, gnl\|tetNig1\|chrUn_random (27230706-27230270)
	1-423, gnl\|xenTro1\|scaffold_632 (696677-697113)