Non-Coding RNA Search

Pig4-TMW8003K21

Sequence:


               
               ACACCCAATGGAGCCCAAGTTCTCCAGGTGAAAAGGGGGTGGAAACTGCAAGTTTCTTAC
GACTGCCGAGCTCCCAACAATTTCACCATTCAGAACCAGTACCCTCGTCTCTCCATTCCA
AATTTAGATGATCAAGCTCACCTGGCGACATACACCGAATACGTACCTCAAATACCAGGA
TATCCAACCTACCCCGCGTATGCCACGTACCCGACCTACCCAGTAGGATTCGCCTGGTAC
CCCGTGGGGCGAGACGGACATGGACGATCGCTCTATGTCCCTGTGATGATCACCTGGAAC
CCGCATTGGTACCGCCAGCCGCCGGTGCCCCAGTATCCGCCGCCGCAGCCGCCGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCCAATGGAGCCCAAGTTCTCCAGGTGAAAAGGGGGTGGAAACTGCAAGTTTCTTAC
GACTGCCGAGCTCCCAACAATTTCACCATTCAGAACCAGTACCCTCGTCTCTCCATTCCA
AATTTAGATGATCAAGCTCACCTGGCGACATACACCGAATACGTACCTCAAATACCAGGA
TATCCAACCTACCCCGCGTATGCCACGTACCCGACCTACCCAGTAGGATTCGCCTGGTAC
CCCGTGGGGCGAGACGGACATGGACGATCGCTCTATGTCCCTGTGATGATCACCTGGAAC
CCGCATTGGTACCGCCAGCCGCCGGTGCCCCAGTATCCGCCGCCGCAGCCGCCGACG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               123-242, - strand, RNAz p=0.762512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-242, - strand, RNAz p=0.762512

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               4-353, gnl|bosTau2|chr4 (2043708-2044054)
               

               
               4-353, gnl|canFam2|chr14 (23076725-23077354)
               

               
               4-353, gnl|dasNov1|scaffold_27651 (18285-18904)
               

               
               4-353, gnl|echTel1|scaffold_243081 (5198-5838)
               

               
               4-353, gnl|hg17|chr7 (93939124-93939754)
               

               
               4-353, gnl|Hg17|chr7 (93939247-93939596)
               

               
               4-353, gnl|mm7|chr6 (4709593-4710212)
               

               
               4-353, gnl|Mm7|chr6 (4709716-4710065)
               

               
               4-353, gnl|oryCun1|scaffold_214374 (6712-6054)
               

               
               4-353, gnl|panTro1|chr6 (95539729-95540360)
               

               
               4-353, gnl|xenTro1|scaffold_1317 (90809-91527)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-353, gnl|bosTau2|chr4 (2043708-2044054)
               

               
               4-353, gnl|canFam2|chr14 (23076725-23077354)
               

               
               4-353, gnl|dasNov1|scaffold_27651 (18285-18904)
               

               
               4-353, gnl|echTel1|scaffold_243081 (5198-5838)
               

               
               4-353, gnl|hg17|chr7 (93939124-93939754)
               

               
               4-353, gnl|Hg17|chr7 (93939247-93939596)
               

               
               4-353, gnl|mm7|chr6 (4709593-4710212)
               

               
               4-353, gnl|Mm7|chr6 (4709716-4710065)
               

               
               4-353, gnl|oryCun1|scaffold_214374 (6712-6054)
               

               
               4-353, gnl|panTro1|chr6 (95539729-95540360)
               

               
               4-353, gnl|xenTro1|scaffold_1317 (90809-91527)

	4-353, gnl\|bosTau2\|chr4 (2043708-2044054)
	4-353, gnl\|canFam2\|chr14 (23076725-23077354)
	4-353, gnl\|dasNov1\|scaffold_27651 (18285-18904)
	4-353, gnl\|echTel1\|scaffold_243081 (5198-5838)
	4-353, gnl\|hg17\|chr7 (93939124-93939754)
	4-353, gnl\|Hg17\|chr7 (93939247-93939596)
	4-353, gnl\|mm7\|chr6 (4709593-4710212)
	4-353, gnl\|Mm7\|chr6 (4709716-4710065)
	4-353, gnl\|oryCun1\|scaffold_214374 (6712-6054)
	4-353, gnl\|panTro1\|chr6 (95539729-95540360)
	4-353, gnl\|xenTro1\|scaffold_1317 (90809-91527)