Non-Coding RNA Search

Pig4-TMW8003O10

Sequence:


               
               TCCCTGCTCTCCATACAGGAGAACATCAAGCATGTGTTGACTTATCCAGTGGATAAAATA
TTAACACTTTAAAGCTAAGAAAGCAAATATGTTGTAAAATAAGCCATTCTTCTATTTGGG
CATTTATCACTTGTATATAATTAACTCTCTAAAGTGATTGCCGTGAAAGTGATAAGATTT
ATTATAATTTTATATTTATTTACTTAAACATTTGGCCAGCACATGGCTGTATGGTCACGT
CGCCAAGGCCTGCTCCCAGCACTCAGCTTTTCCATCTCATTGAGGTCGCCCCCTGTGGGC
GTGGGCACTTTCTGTCCTGGCAAGGGAGGCGGGTCTGAGCATCCCGGGCTGGGGAAGCCT
AAGGGAGACAAGCGAGTTTAGTCTAGTCAAGGCGGCTATCTTTAATCTTACTGCCTTCCA
AAGCTTCAAAAGTGTGTCCTGTCCTGTCCTATTGTAGTGACAATTTCTCAGCCTAGTAAG
GTTAATGTGAACAGAAACTTGCATTATGCCCTTTGACACTGGGGCAGGGGGAGGGGATTC
CCTTTCCCATCAAATGCAGCTTATTTATTTATTTATTTGAGATGAATCCTTGTTGCCTCA
AGAGTTTTCCCCCCTCAGAGATAATAGCAGTGGCTCTTGATGGATCCATTTGTTGCCGTG
GTGATGTGCCCACTCCTTTTGTTGGCGGGTCTCTACTTCAATAAGCCCCTTCCTGTTATC
GGCCCGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTGCTCTCCATACAGGAGAACATCAAGCATGTGTTGACTTATCCAGTGGATAAAATA
TTAACACTTTAAAGCTAAGAAAGCAAATATGTTGTAAAATAAGCCATTCTTCTATTTGGG
CATTTATCACTTGTATATAATTAACTCTCTAAAGTGATTGCCGTGAAAGTGATAAGATTT
ATTATAATTTTATATTTATTTACTTAAACATTTGGCCAGCACATGGCTGTATGGTCACGT
CGCCAAGGCCTGCTCCCAGCACTCAGCTTTTCCATCTCATTGAGGTCGCCCCCTGTGGGC
GTGGGCACTTTCTGTCCTGGCAAGGGAGGCGGGTCTGAGCATCCCGGGCTGGGGAAGCCT
AAGGGAGACAAGCGAGTTTAGTCTAGTCAAGGCGGCTATCTTTAATCTTACTGCCTTCCA
AAGCTTCAAAAGTGTGTCCTGTCCTGTCCTATTGTAGTGACAATTTCTCAGCCTAGTAAG
GTTAATGTGAACAGAAACTTGCATTATGCCCTTTGACACTGGGGCAGGGGGAGGGGATTC
CCTTTCCCATCAAATGCAGCTTATTTATTTATTTATTTGAGATGAATCCTTGTTGCCTCA
AGAGTTTTCCCCCCTCAGAGATAATAGCAGTGGCTCTTGATGGATCCATTTGTTGCCGTG
GTGATGTGCCCACTCCTTTTGTTGGCGGGTCTCTACTTCAATAAGCCCCTTCCTGTTATC
GGCCCGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-679, + strand, RNAz p=0.999936

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-679, + strand, RNAz p=0.999936

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               522-679, AMGNNUC (gb|CB801886.1|), blast E-value=0, identity=92.59%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               522-679, AMGNNUC (gb|CB801886.1|), blast E-value=0, identity=92.59%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-732, gnl|bosTau2|chr2 (62161341-62160608)
               

               
               5-732, gnl|Hg17|chr2 (208440056-208440802)
               

               
               5-732, gnl|Mm7|chr1 (64962205-64962966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-732, gnl|bosTau2|chr2 (62161341-62160608)
               

               
               5-732, gnl|Hg17|chr2 (208440056-208440802)
               

               
               5-732, gnl|Mm7|chr1 (64962205-64962966)

	5-732, gnl\|bosTau2\|chr2 (62161341-62160608)
	5-732, gnl\|Hg17\|chr2 (208440056-208440802)
	5-732, gnl\|Mm7\|chr1 (64962205-64962966)