Non-Coding RNA Search

Pig4-TMW8004F10

Sequence:


               
               GGGGAGCTCCTTTCCCTCTAACATACAGTGTGAGCTTGGCAGGGAGTTTCTGACAGTATC
AAAAGAGGATTTAGCTCTGAACACTTGCCATGAAAGTGTCTCTATCTGCGCCCAGTGTAG
GCTTTCAGAAGAGAGCATTGTGTCCTGCGCAGACGGTAATTGAGTGAATGAGGCCTGGCG
GCGGGGCCTGCCGTGGAGCCCTGATAAGGACATAAAGACAGGCTTCAAGGGCCTGCTTGC
CAGAGGCAGAGAGGCTGGTGCGGCCCTGGGAGGAGGGAAGCCCAGCCGTCCCCGTGGACA
CCTGGGAACTCAGCCCCTGCAGCCCTGCACAGGGAGGATCCCGGGCCCCAGCATTCTGCA
CCTGGGCACCAGGCGGGCACTCTGGGGGAGGGGGGTGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGCTCCTTTCCCTCTAACATACAGTGTGAGCTTGGCAGGGAGTTTCTGACAGTATC
AAAAGAGGATTTAGCTCTGAACACTTGCCATGAAAGTGTCTCTATCTGCGCCCAGTGTAG
GCTTTCAGAAGAGAGCATTGTGTCCTGCGCAGACGGTAATTGAGTGAATGAGGCCTGGCG
GCGGGGCCTGCCGTGGAGCCCTGATAAGGACATAAAGACAGGCTTCAAGGGCCTGCTTGC
CAGAGGCAGAGAGGCTGGTGCGGCCCTGGGAGGAGGGAAGCCCAGCCGTCCCCGTGGACA
CCTGGGAACTCAGCCCCTGCAGCCCTGCACAGGGAGGATCCCGGGCCCCAGCATTCTGCA
CCTGGGCACCAGGCGGGCACTCTGGGGGAGGGGGGTGAGCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               120-262, - strand, RNAz p=0.989478
               

               
               180-272, - strand, RNAz p=0.522059

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-262, - strand, RNAz p=0.989478
               

               
               180-272, - strand, RNAz p=0.522059

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-272, gnl|bosTau2|chrX (46066937-46067209)
               

               
               1-272, gnl|canFam2|chr2 (64477122-64476721)
               

               
               1-272, gnl|dasNov1|scaffold_41054 (140-542)
               

               
               1-272, gnl|echTel1|scaffold_323220 (96745-96336)
               

               
               1-272, gnl|galGal2|chr11 (4446575-4446215)
               

               
               1-272, gnl|hg17|chr16 (52826527-52826919)
               

               
               1-272, gnl|Hg17|chr16 (52826639-52826933)
               

               
               1-272, gnl|loxAfr1|scaffold_16932 (43756-43353)
               

               
               1-272, gnl|mm7|chr8 (90358050-90358421)
               

               
               1-272, gnl|Mm7|chr8 (90358155-90358426)
               

               
               1-272, gnl|monDom2|scaffold_35 (20035622-20036041)
               

               
               1-272, gnl|panTro1|chr18 (46879677-46880067)
               

               
               1-272, gnl|rheMac2|chr20 (52460312-52460702)
               

               
               1-272, gnl|rn3|chr19 (16385431-16385060)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-272, gnl|bosTau2|chrX (46066937-46067209)
               

               
               1-272, gnl|canFam2|chr2 (64477122-64476721)
               

               
               1-272, gnl|dasNov1|scaffold_41054 (140-542)
               

               
               1-272, gnl|echTel1|scaffold_323220 (96745-96336)
               

               
               1-272, gnl|galGal2|chr11 (4446575-4446215)
               

               
               1-272, gnl|hg17|chr16 (52826527-52826919)
               

               
               1-272, gnl|Hg17|chr16 (52826639-52826933)
               

               
               1-272, gnl|loxAfr1|scaffold_16932 (43756-43353)
               

               
               1-272, gnl|mm7|chr8 (90358050-90358421)
               

               
               1-272, gnl|Mm7|chr8 (90358155-90358426)
               

               
               1-272, gnl|monDom2|scaffold_35 (20035622-20036041)
               

               
               1-272, gnl|panTro1|chr18 (46879677-46880067)
               

               
               1-272, gnl|rheMac2|chr20 (52460312-52460702)
               

               
               1-272, gnl|rn3|chr19 (16385431-16385060)

	120-262, - strand, RNAz p=0.989478
	180-272, - strand, RNAz p=0.522059

	1-272, gnl\|bosTau2\|chrX (46066937-46067209)
	1-272, gnl\|canFam2\|chr2 (64477122-64476721)
	1-272, gnl\|dasNov1\|scaffold_41054 (140-542)
	1-272, gnl\|echTel1\|scaffold_323220 (96745-96336)
	1-272, gnl\|galGal2\|chr11 (4446575-4446215)
	1-272, gnl\|hg17\|chr16 (52826527-52826919)
	1-272, gnl\|Hg17\|chr16 (52826639-52826933)
	1-272, gnl\|loxAfr1\|scaffold_16932 (43756-43353)
	1-272, gnl\|mm7\|chr8 (90358050-90358421)
	1-272, gnl\|Mm7\|chr8 (90358155-90358426)
	1-272, gnl\|monDom2\|scaffold_35 (20035622-20036041)
	1-272, gnl\|panTro1\|chr18 (46879677-46880067)
	1-272, gnl\|rheMac2\|chr20 (52460312-52460702)
	1-272, gnl\|rn3\|chr19 (16385431-16385060)